Variant report

Variant	rs12324006
Chromosome Location	chr15:56647674-56647675
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 120 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:119)

rs_ID	r²[population]
rs10152826	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs10162834	0.93[CEU][hapmap];0.91[CHB][hapmap];0.92[JPT][hapmap]
rs10163161	0.93[CEU][hapmap];0.91[CHB][hapmap];0.93[JPT][hapmap]
rs10438327	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1072358	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11852414	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11853962	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11855937	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11856170	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11856691	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11857306	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs11857374	0.89[EUR][1000 genomes]
rs11858489	0.92[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs12708449	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12898789	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12901182	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12902594	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12907445	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12908839	1.00[CEU][hapmap];0.83[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12910210	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12910212	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1402171	0.91[EUR][1000 genomes]
rs1426069	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1426070	0.88[CEU][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1477588	0.91[EUR][1000 genomes]
rs1520532	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16976890	0.82[CEU][hapmap]
rs17238691	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17819444	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1829543	0.92[CEU][hapmap]
rs1863425	0.91[EUR][1000 genomes]
rs1991266	0.91[EUR][1000 genomes]
rs2098897	0.91[EUR][1000 genomes]
rs2114185	0.91[EUR][1000 genomes]
rs2460649	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs2465405	0.88[CEU][hapmap];0.91[CHB][hapmap];0.92[JPT][hapmap];0.80[EUR][1000 genomes]
rs2465968	0.91[EUR][1000 genomes]
rs2465969	0.84[EUR][1000 genomes]
rs2554284	0.91[EUR][1000 genomes]
rs2554287	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs2554288	0.91[EUR][1000 genomes]
rs2584689	0.92[CEU][hapmap]
rs2682013	0.91[EUR][1000 genomes]
rs2682015	0.86[EUR][1000 genomes]
rs2682016	0.90[EUR][1000 genomes]
rs2682024	0.91[EUR][1000 genomes]
rs2682025	0.91[EUR][1000 genomes]
rs2682026	0.91[EUR][1000 genomes]
rs2682027	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2682031	0.91[CEU][hapmap]
rs2682050	0.91[CHB][hapmap];0.92[JPT][hapmap];0.90[YRI][hapmap]
rs2682055	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2713919	0.91[EUR][1000 genomes]
rs2713921	0.91[EUR][1000 genomes]
rs2713922	0.93[CEU][hapmap];0.81[EUR][1000 genomes]
rs2713937	0.92[CEU][hapmap]
rs2713940	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2718904	0.91[EUR][1000 genomes]
rs2718905	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2718921	0.96[CEU][hapmap];0.91[EUR][1000 genomes]
rs2718922	0.91[EUR][1000 genomes]
rs2718923	0.91[EUR][1000 genomes]
rs2718924	0.93[CEU][hapmap];0.81[EUR][1000 genomes]
rs2718934	0.92[CHB][hapmap]
rs2718947	0.89[EUR][1000 genomes]
rs2725850	0.91[EUR][1000 genomes]
rs2725851	0.91[EUR][1000 genomes]
rs2725852	0.91[EUR][1000 genomes]
rs2725853	0.91[EUR][1000 genomes]
rs2725855	0.90[EUR][1000 genomes]
rs2725856	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs2725857	0.91[EUR][1000 genomes]
rs2725861	0.91[EUR][1000 genomes]
rs2725871	0.91[CHB][hapmap];0.93[JPT][hapmap]
rs28604556	0.82[ASN][1000 genomes]
rs28621861	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28622888	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28866008	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34544252	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34597546	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34684027	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35131119	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35155290	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35187662	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35361016	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35470681	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35570374	0.80[EUR][1000 genomes]
rs35895864	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35968448	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36082281	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3784551	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4774238	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4774239	0.82[EUR][1000 genomes]
rs4774852	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4774854	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4774855	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4774857	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4774860	0.82[EUR][1000 genomes]
rs56319062	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57947969	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60648061	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61010710	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62022130	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62023869	0.82[EUR][1000 genomes]
rs62047375	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62047376	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62047377	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6493844	0.91[EUR][1000 genomes]
rs67347418	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs67639563	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7163807	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs724100	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs767142	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs795786	0.82[CEU][hapmap]
rs795800	0.82[CEU][hapmap]
rs8032826	0.91[EUR][1000 genomes]
rs8038818	0.82[ASN][1000 genomes]
rs8041422	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs894415	0.92[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833019	chr15:56486029-56649933	Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56637800-56657000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr15:56644000-56656800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr15:56644400-56648200	Weak transcription	HSMMtube	muscle
4	chr15:56646200-56648200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr15:56646200-56648600	Weak transcription	HSMM	muscle
6	chr15:56646400-56648600	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr15:56646600-56647800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr15:56646600-56648200	Weak transcription	Osteobl	bone
9	chr15:56646600-56648400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr15:56646600-56648600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr15:56646600-56648600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr15:56646600-56648800	Weak transcription	NHDF-Ad	bronchial
13	chr15:56646800-56648400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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