Variant report

Variant	rs2682031
Chromosome Location	chr15:56501276-56501277
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:56500425..56503148-chr15:56514379..56516558,2	K562	blood:
2	chr15:56499669..56501343-chr15:56501763..56504338,2	K562	blood:

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10152826	0.87[CEU][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10162834	1.00[CEU][hapmap];0.84[JPT][hapmap];0.87[EUR][1000 genomes]
rs10163161	1.00[CEU][hapmap];0.86[JPT][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10438327	0.86[CEU][hapmap]
rs1072358	0.81[EUR][1000 genomes]
rs11632218	0.91[CEU][hapmap];0.86[JPT][hapmap];0.81[EUR][1000 genomes]
rs11853962	0.91[CEU][hapmap];0.80[EUR][1000 genomes]
rs11858173	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11858245	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12898789	0.81[EUR][1000 genomes]
rs12899534	1.00[CEU][hapmap];0.84[JPT][hapmap];0.84[EUR][1000 genomes]
rs12907445	0.81[EUR][1000 genomes]
rs12909153	0.80[EUR][1000 genomes]
rs13379820	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17238601	1.00[CEU][hapmap];0.85[JPT][hapmap];0.82[EUR][1000 genomes]
rs17238691	0.91[CEU][hapmap];0.80[EUR][1000 genomes]
rs17819444	0.80[EUR][1000 genomes]
rs1829543	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2247838	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2414466	0.80[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.94[ASN][1000 genomes]
rs2460649	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2465405	0.95[CEU][hapmap];0.85[JPT][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2465969	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2554287	0.91[CEU][hapmap]
rs2584689	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2682030	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2682032	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2682048	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2682050	0.85[JPT][hapmap]
rs2682055	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2713922	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2713934	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2713937	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2713939	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2718921	0.87[CEU][hapmap]
rs2718924	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2718947	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2725856	0.91[CEU][hapmap]
rs2725871	0.86[JPT][hapmap]
rs2947023	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34544252	0.80[EUR][1000 genomes]
rs35131119	0.81[EUR][1000 genomes]
rs35187662	0.81[EUR][1000 genomes]
rs35840822	0.84[EUR][1000 genomes]
rs36082281	0.80[EUR][1000 genomes]
rs4774852	0.85[AMR][1000 genomes]
rs4774854	0.91[CEU][hapmap]
rs56274791	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61010710	0.85[AMR][1000 genomes]
rs62044114	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6493836	0.89[ASN][1000 genomes]
rs6493844	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7163807	0.91[CEU][hapmap];0.86[JPT][hapmap]
rs748344	0.95[CEU][hapmap];0.85[JPT][hapmap];0.80[EUR][1000 genomes]
rs767142	0.81[EUR][1000 genomes]
rs8032826	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs8041422	0.86[CEU][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs894415	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833019	chr15:56486029-56649933	Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv528965	chr15:56489159-56504598	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56453600-56515000	Weak transcription	NHLF	lung
2	chr15:56459200-56511000	Weak transcription	Esophagus	oesophagus
3	chr15:56466000-56514200	Weak transcription	Duodenum Mucosa	Duodenum
4	chr15:56467000-56511600	Weak transcription	Fetal Intestine Small	intestine
5	chr15:56470800-56503800	Weak transcription	Fetal Lung	lung
6	chr15:56480200-56515400	Weak transcription	Hela-S3	cervix
7	chr15:56485000-56502800	Weak transcription	Gastric	stomach
8	chr15:56485600-56521200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr15:56489200-56503600	Weak transcription	Primary hematopoietic stem cells	blood
10	chr15:56493200-56515400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr15:56495200-56501600	Enhancers	Primary B cells from peripheral blood	blood
12	chr15:56495200-56504400	Weak transcription	Fetal Intestine Large	intestine
13	chr15:56496600-56515200	Weak transcription	Left Ventricle	heart
14	chr15:56497000-56502000	Enhancers	Primary T killer memory cells from peripheral blood	blood
15	chr15:56497000-56502600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
16	chr15:56497000-56502600	Enhancers	Primary T helper cells fromperipheralblood	blood
17	chr15:56497400-56505000	Weak transcription	HSMMtube	muscle
18	chr15:56497600-56501600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
19	chr15:56497800-56502400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
20	chr15:56498000-56503800	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr15:56498200-56508000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr15:56498400-56501400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr15:56498400-56503800	Weak transcription	HepG2	liver
24	chr15:56498400-56504400	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr15:56498400-56514400	Weak transcription	NHEK	skin
26	chr15:56498400-56515200	Weak transcription	HUVEC	blood vessel
27	chr15:56498600-56501800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr15:56498600-56502600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr15:56498600-56502600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr15:56498800-56502800	Enhancers	Dnd41	blood
31	chr15:56499000-56501800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
32	chr15:56499200-56502000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
33	chr15:56499200-56502400	Enhancers	Primary T helper naive cells from peripheral blood	blood
34	chr15:56499400-56501600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr15:56499400-56502600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
36	chr15:56499600-56501800	Flanking Active TSS	GM12878-XiMat	blood
37	chr15:56499800-56502000	Enhancers	iPS-15b Cell Line	embryonic stem cell
38	chr15:56500000-56501400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr15:56500000-56501400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr15:56500000-56503000	Enhancers	HUES64 Cell Line	embryonic stem cell
41	chr15:56500200-56501400	Enhancers	Osteobl	bone
42	chr15:56500200-56502000	Enhancers	iPS-18 Cell Line	embryonic stem cell
43	chr15:56500200-56502600	Enhancers	HUES48 Cell Line	embryonic stem cell
44	chr15:56500200-56502600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
45	chr15:56500200-56504000	Weak transcription	A549	lung
46	chr15:56500400-56501400	Enhancers	Muscle Satellite Cultured Cells	--
47	chr15:56500400-56501400	Enhancers	Liver	Liver
48	chr15:56500400-56501400	Enhancers	K562	blood
49	chr15:56500400-56501800	Enhancers	Primary T cells from cord blood	blood
50	chr15:56500600-56501400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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