Variant report

Variant	rs10438327
Chromosome Location	chr15:56655399-56655400
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:56654764..56656844-chr15:56657191..56659498,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000151575	Chromatin interaction

Extended variants
information (count: 101 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:101)

rs_ID	r²[population]
rs10152826	0.92[CEU][hapmap];1.00[CHB][hapmap];0.97[GIH][hapmap]
rs10163161	0.88[CEU][hapmap];0.91[CHB][hapmap]
rs1072358	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11852414	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11853962	0.83[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.88[LWK][hapmap];0.94[MKK][hapmap];0.87[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11855937	0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.88[LWK][hapmap];0.94[MKK][hapmap];0.87[TSI][hapmap];1.00[YRI][hapmap];0.80[EUR][1000 genomes]
rs11856170	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11856691	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11857306	0.96[CEU][hapmap];0.81[TSI][hapmap]
rs11858489	0.88[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];0.84[TSI][hapmap]
rs12324006	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12708449	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12898789	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12901182	0.96[CEU][hapmap];1.00[CHB][hapmap];0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12902594	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12907445	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12908839	0.96[CEU][hapmap];0.82[CHB][hapmap];1.00[YRI][hapmap]
rs12910210	0.80[EUR][1000 genomes]
rs12910212	0.80[EUR][1000 genomes]
rs1402171	0.81[EUR][1000 genomes]
rs1426069	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1426070	0.84[CEU][hapmap];0.82[GIH][hapmap];0.85[TSI][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1477588	0.82[EUR][1000 genomes]
rs1520532	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17238691	0.96[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17819444	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1829543	0.88[CEU][hapmap];0.80[TSI][hapmap]
rs1863425	0.82[EUR][1000 genomes]
rs1991266	0.82[EUR][1000 genomes]
rs2098897	0.82[EUR][1000 genomes]
rs2114185	0.82[EUR][1000 genomes]
rs2460649	0.84[CEU][hapmap];0.80[TSI][hapmap]
rs2465405	0.84[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.83[LWK][hapmap]
rs2465968	0.82[EUR][1000 genomes]
rs2554284	0.81[EUR][1000 genomes]
rs2554287	0.96[CEU][hapmap];0.82[EUR][1000 genomes]
rs2554288	0.82[EUR][1000 genomes]
rs2584689	0.88[CEU][hapmap];0.80[TSI][hapmap]
rs2682013	0.82[EUR][1000 genomes]
rs2682016	0.80[EUR][1000 genomes]
rs2682024	0.82[EUR][1000 genomes]
rs2682025	0.82[EUR][1000 genomes]
rs2682026	0.82[EUR][1000 genomes]
rs2682027	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2682031	0.86[CEU][hapmap]
rs2682050	0.91[CHB][hapmap];0.95[CHD][hapmap];0.83[LWK][hapmap];0.90[YRI][hapmap]
rs2713919	0.82[EUR][1000 genomes]
rs2713921	0.82[EUR][1000 genomes]
rs2713922	0.88[CEU][hapmap]
rs2713937	0.87[CEU][hapmap]
rs2713940	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2718904	0.82[EUR][1000 genomes]
rs2718905	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2718921	0.96[CEU][hapmap];0.81[EUR][1000 genomes]
rs2718922	0.81[EUR][1000 genomes]
rs2718923	0.82[EUR][1000 genomes]
rs2718924	0.88[CEU][hapmap]
rs2718934	0.92[CHB][hapmap]
rs2725850	0.81[EUR][1000 genomes]
rs2725851	0.81[EUR][1000 genomes]
rs2725852	0.81[EUR][1000 genomes]
rs2725853	0.81[EUR][1000 genomes]
rs2725855	0.81[EUR][1000 genomes]
rs2725856	0.96[CEU][hapmap];0.82[EUR][1000 genomes]
rs2725857	0.82[EUR][1000 genomes]
rs2725861	0.82[EUR][1000 genomes]
rs2725871	0.91[CHB][hapmap]
rs28622888	0.81[EUR][1000 genomes]
rs28866008	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34544252	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34597546	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34684027	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35131119	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35155290	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35361016	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35470681	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35895864	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35968448	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs36082281	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3784551	0.80[EUR][1000 genomes]
rs4774238	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4774852	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4774854	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4774855	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4774857	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56319062	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57947969	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60648061	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61010710	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62022130	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62047375	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62047376	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62047377	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6493844	0.82[EUR][1000 genomes]
rs67639563	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7163807	0.96[CEU][hapmap];1.00[CHB][hapmap]
rs724100	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs767142	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8032826	0.82[EUR][1000 genomes]
rs8041422	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.86[TSI][hapmap]
rs894415	0.88[CEU][hapmap];0.80[TSI][hapmap]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56637800-56657000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr15:56644000-56656800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr15:56649600-56656800	Weak transcription	HMEC	breast
4	chr15:56654800-56656800	Weak transcription	Skeletal Muscle Male	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links