Variant report

Variant	rs10163161
Chromosome Location	chr15:56458630-56458631
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:56452674..56455465-chr15:56458402..56460158,2	K562	blood:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10152826	0.89[CEU][hapmap];0.91[CHB][hapmap];0.92[JPT][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10162834	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10438327	0.88[CEU][hapmap];0.91[CHB][hapmap]
rs11632218	0.89[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11856691	0.82[AMR][1000 genomes]
rs11858173	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11858245	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12899534	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12909153	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13379820	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17238601	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17819384	0.88[YRI][hapmap]
rs1829543	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2247838	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2414466	0.83[CEU][hapmap]
rs2460649	0.96[CEU][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2465405	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2465969	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2554287	0.92[CEU][hapmap]
rs2584689	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2682030	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2682031	1.00[CEU][hapmap];0.86[JPT][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2682032	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2682048	0.89[AMR][1000 genomes]
rs2682050	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2682055	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2713922	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2713934	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2713937	1.00[CEU][hapmap];0.83[JPT][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2713939	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2718921	0.89[CEU][hapmap]
rs2718924	1.00[CEU][hapmap];0.80[JPT][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2718934	0.83[CHB][hapmap]
rs2718947	0.80[EUR][1000 genomes]
rs2725856	0.92[CEU][hapmap]
rs2725871	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs28621861	0.80[AMR][1000 genomes]
rs2947023	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35187662	0.87[AMR][1000 genomes]
rs35840822	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56274791	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62044114	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6493836	0.80[EUR][1000 genomes]
rs6493844	0.83[EUR][1000 genomes]
rs7163807	0.92[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs748344	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8032826	0.83[EUR][1000 genomes]
rs8041422	0.88[CEU][hapmap];0.91[CHB][hapmap];0.92[JPT][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs894415	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833018	chr15:56325799-56492535	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1045906	chr15:56333180-56473614	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	esv1811079	chr15:56448125-56462293	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56433800-56464000	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr15:56435200-56458800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr15:56435400-56461000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr15:56435400-56462400	Weak transcription	Fetal Thymus	thymus
5	chr15:56435400-56465200	Weak transcription	Thymus	Thymus
6	chr15:56436600-56458800	Weak transcription	Primary B cells from cord blood	blood
7	chr15:56441000-56461400	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr15:56442000-56462600	Weak transcription	HSMM	muscle
9	chr15:56442600-56470600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr15:56442800-56462600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr15:56443200-56462600	Weak transcription	Duodenum Mucosa	Duodenum
12	chr15:56446600-56468400	Weak transcription	Fetal Lung	lung
13	chr15:56448400-56460200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr15:56452200-56460800	Weak transcription	Primary hematopoietic stem cells	blood
15	chr15:56452400-56458800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr15:56452400-56458800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr15:56453000-56460800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr15:56453000-56463200	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr15:56453000-56479600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr15:56453200-56462000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr15:56453200-56465000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr15:56453400-56463400	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr15:56453600-56515000	Weak transcription	NHLF	lung
24	chr15:56453800-56463000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr15:56454000-56462800	Weak transcription	Brain Germinal Matrix	brain
26	chr15:56454000-56464600	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr15:56454200-56460600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr15:56454200-56465000	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr15:56454400-56462600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr15:56454400-56462600	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr15:56454400-56462600	Weak transcription	A549	lung
32	chr15:56454400-56463000	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr15:56454400-56464200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr15:56454400-56465000	Weak transcription	Fetal Stomach	stomach
35	chr15:56454400-56465600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr15:56454400-56466400	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr15:56454400-56467000	Weak transcription	Brain Angular Gyrus	brain
38	chr15:56454400-56467200	Weak transcription	Brain Cingulate Gyrus	brain
39	chr15:56454400-56470000	Weak transcription	Colon Smooth Muscle	Colon
40	chr15:56454400-56470200	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr15:56454400-56473400	Weak transcription	K562	blood
42	chr15:56454600-56463400	Weak transcription	HUES64 Cell Line	embryonic stem cell
43	chr15:56454600-56463400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
44	chr15:56454600-56465600	Weak transcription	Brain Substantia Nigra	brain
45	chr15:56454600-56484000	Weak transcription	Brain Anterior Caudate	brain
46	chr15:56454800-56465200	Weak transcription	Fetal Muscle Trunk	muscle
47	chr15:56455200-56460800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr15:56455400-56462400	Weak transcription	Cortex derived primary cultured neurospheres	brain
49	chr15:56456000-56460400	Weak transcription	Osteobl	bone
50	chr15:56456000-56463400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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