Variant report

Variant	rs2682048
Chromosome Location	chr15:56540909-56540910
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:56536983..56539715-chr15:56539921..56543667,5	K562	blood:
2	chr15:56540398..56542023-chr15:56720800..56721752,16	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10152826	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10162834	0.81[AMR][1000 genomes]
rs10163161	0.89[AMR][1000 genomes]
rs11856691	0.82[AMR][1000 genomes]
rs11858173	0.88[AMR][1000 genomes]
rs11858245	0.88[AMR][1000 genomes]
rs12899534	0.83[AMR][1000 genomes]
rs13379820	0.84[AMR][1000 genomes]
rs17238601	0.82[AMR][1000 genomes]
rs1829543	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2247838	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2460649	0.85[EUR][1000 genomes]
rs2465405	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2465969	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2584689	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2682030	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2682031	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2682032	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2682050	0.89[ASN][1000 genomes]
rs2682055	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2713922	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2713934	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2713937	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2713939	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2718924	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2718947	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28621861	0.89[AMR][1000 genomes]
rs2947023	0.82[EUR][1000 genomes]
rs35187662	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs35840822	0.82[AMR][1000 genomes]
rs56274791	0.88[AMR][1000 genomes]
rs62044114	0.89[AMR][1000 genomes]
rs6493844	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8032826	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8041422	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs894415	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833019	chr15:56486029-56649933	Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv569547	chr15:56504598-56572176	ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56538200-56546600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr15:56538400-56541000	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr15:56538400-56541000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr15:56538400-56541000	Weak transcription	Fetal Lung	lung
5	chr15:56538400-56544000	Weak transcription	Fetal Brain Male	brain
6	chr15:56538400-56546000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr15:56538600-56543400	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr15:56538800-56541000	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr15:56538800-56541000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr15:56538800-56541000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr15:56538800-56541000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr15:56538800-56541000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr15:56538800-56541000	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr15:56538800-56544000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr15:56538800-56544000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr15:56538800-56546400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr15:56538800-56546600	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr15:56540000-56541200	Enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr15:56540200-56541200	Enhancers	Duodenum Mucosa	Duodenum
20	chr15:56540200-56541800	Enhancers	Fetal Intestine Small	intestine
21	chr15:56540400-56541200	Enhancers	K562	blood
22	chr15:56540400-56541600	Enhancers	Hela-S3	cervix
23	chr15:56540600-56541400	Weak transcription	Small Intestine	intestine
24	chr15:56540600-56541400	Enhancers	Stomach Mucosa	stomach
25	chr15:56540600-56541600	Enhancers	Fetal Intestine Large	intestine
26	chr15:56540600-56543200	Weak transcription	Primary hematopoietic stem cells	blood
27	chr15:56540800-56541200	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr15:56540800-56541200	Enhancers	HepG2	liver
29	chr15:56540800-56541400	Enhancers	HUES64 Cell Line	embryonic stem cell
30	chr15:56540800-56544200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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