Variant report

Variant	rs2682055
Chromosome Location	chr15:56548215-56548216
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:56533157..56539020-chr15:56544541..56548879,7	K562	blood:

Variant related genes	Relation type
ENSG00000151575	Chromatin interaction
ENSG00000181827	Chromatin interaction

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs10152826	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10162834	0.83[AMR][1000 genomes]
rs10163161	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1072358	0.85[EUR][1000 genomes]
rs11632218	0.82[AMR][1000 genomes]
rs11852414	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11853962	0.85[EUR][1000 genomes]
rs11856170	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11856691	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11858173	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11858245	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12324006	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12708449	0.80[EUR][1000 genomes]
rs12898789	0.85[EUR][1000 genomes]
rs12899534	0.85[AMR][1000 genomes]
rs12901182	0.80[EUR][1000 genomes]
rs12902594	0.84[EUR][1000 genomes]
rs12907445	0.85[EUR][1000 genomes]
rs13379820	0.87[AMR][1000 genomes]
rs1426069	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1426070	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1520532	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17238601	0.84[AMR][1000 genomes]
rs17238691	0.85[EUR][1000 genomes]
rs17819444	0.85[EUR][1000 genomes]
rs1829543	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2247838	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2460649	0.94[EUR][1000 genomes]
rs2465405	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2465969	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2584689	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2682027	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2682030	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2682031	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2682032	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2682048	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2682050	0.87[ASN][1000 genomes]
rs2713922	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2713934	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2713937	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2713939	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2713940	0.84[EUR][1000 genomes]
rs2718905	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2718924	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2718947	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28604556	0.81[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs28621861	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs28866008	0.82[EUR][1000 genomes]
rs2947023	0.91[EUR][1000 genomes]
rs34544252	0.85[EUR][1000 genomes]
rs34597546	0.80[EUR][1000 genomes]
rs34684027	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35131119	0.85[EUR][1000 genomes]
rs35155290	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35187662	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35361016	0.80[EUR][1000 genomes]
rs35840822	0.84[AMR][1000 genomes]
rs35895864	0.80[EUR][1000 genomes]
rs35968448	0.85[EUR][1000 genomes]
rs36082281	0.85[EUR][1000 genomes]
rs4774237	0.87[ASN][1000 genomes]
rs4774238	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4774852	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4774854	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4774855	0.82[EUR][1000 genomes]
rs56274791	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56319062	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs57947969	0.84[EUR][1000 genomes]
rs60648061	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61010710	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62022130	0.84[EUR][1000 genomes]
rs62044114	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62047375	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62047376	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62047377	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6493844	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67639563	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs724100	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs767142	0.85[EUR][1000 genomes]
rs8032826	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8038818	0.90[ASN][1000 genomes]
rs8041422	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs894415	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833019	chr15:56486029-56649933	Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv569547	chr15:56504598-56572176	ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56547600-56548400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr15:56548000-56548600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links