Variant report
| Variant | rs4774237 |
|---|---|
| Chromosome Location | chr15:56601959-56601960 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-TCF12-7 | chr15:56601442-56602860 | ucscGeneNc_uc002afc_2 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:37)
| rs_ID | r2[population] |
|---|---|
| rs10152826 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.83[AFR][1000 genomes];0.88[ASN][1000 genomes] |
| rs10162834 | 0.91[CHB][hapmap];0.92[JPT][hapmap] |
| rs10163161 | 0.91[CHB][hapmap];0.93[JPT][hapmap] |
| rs10438327 | 1.00[CHB][hapmap] |
| rs11852414 | 0.88[ASN][1000 genomes] |
| rs11853962 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs11855937 | 0.91[CHB][hapmap];1.00[JPT][hapmap] |
| rs11856691 | 0.88[ASN][1000 genomes] |
| rs11858489 | 0.91[CHB][hapmap];1.00[JPT][hapmap] |
| rs12899534 | 0.91[CHB][hapmap];0.92[JPT][hapmap] |
| rs12901182 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs12908839 | 0.83[CHB][hapmap];0.93[JPT][hapmap] |
| rs1426069 | 0.83[ASN][1000 genomes] |
| rs1520532 | 0.83[ASN][1000 genomes] |
| rs17238691 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs2465405 | 0.91[CHB][hapmap];0.92[JPT][hapmap] |
| rs2682050 | 0.91[CHB][hapmap];0.92[JPT][hapmap] |
| rs2682055 | 0.87[ASN][1000 genomes] |
| rs2718934 | 0.92[CHB][hapmap] |
| rs2718947 | 0.94[ASN][1000 genomes] |
| rs2725871 | 0.91[CHB][hapmap];0.93[JPT][hapmap] |
| rs28604556 | 0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs28621861 | 0.96[ASN][1000 genomes] |
| rs35187662 | 0.94[ASN][1000 genomes] |
| rs4774238 | 0.88[ASN][1000 genomes] |
| rs4774852 | 0.90[AFR][1000 genomes];0.88[ASN][1000 genomes] |
| rs4774854 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs60648061 | 0.85[ASN][1000 genomes] |
| rs61010710 | 0.88[ASN][1000 genomes] |
| rs62047375 | 0.83[ASN][1000 genomes] |
| rs62047376 | 0.83[ASN][1000 genomes] |
| rs62047377 | 0.83[ASN][1000 genomes] |
| rs6493844 | 0.92[AFR][1000 genomes];0.94[ASN][1000 genomes] |
| rs7163807 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs8032826 | 0.92[AFR][1000 genomes];0.94[ASN][1000 genomes] |
| rs8038818 | 0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs8041422 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.91[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv833019 | chr15:56486029-56649933 | Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
