Variant report

Variant	rs12905782
Chromosome Location	chr15:56654125-56654126
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs11630363	0.88[CEU][hapmap];0.95[CHB][hapmap];0.92[JPT][hapmap]
rs11633374	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11855094	0.95[CHB][hapmap]
rs12900678	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.88[LWK][hapmap];0.86[MEX][hapmap];0.96[MKK][hapmap];0.89[TSI][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12908734	0.91[ASN][1000 genomes]
rs12911427	0.87[CEU][hapmap]
rs1402177	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1477590	0.81[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1549452	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];0.82[MEX][hapmap];0.87[TSI][hapmap];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1554410	0.85[ASN][1000 genomes]
rs16976890	0.95[CHB][hapmap]
rs17819438	0.92[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2114183	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2249090	0.84[CEU][hapmap];0.91[CHB][hapmap];0.83[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.85[TSI][hapmap]
rs2303441	0.92[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2460646	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2460650	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2554287	0.95[CHB][hapmap]
rs2682012	0.81[ASN][1000 genomes]
rs2682019	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2682021	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2682023	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2682051	0.92[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];0.93[JPT][hapmap];0.82[MEX][hapmap]
rs2682053	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs2682054	0.92[CEU][hapmap]
rs2682059	0.92[CEU][hapmap]
rs2713924	0.92[CEU][hapmap]
rs2713933	0.92[CEU][hapmap];0.95[CHB][hapmap];0.93[JPT][hapmap]
rs2713936	0.92[CEU][hapmap];0.95[CHB][hapmap];0.93[JPT][hapmap]
rs2713941	0.92[CEU][hapmap]
rs2718901	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2718908	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2718921	0.95[CHB][hapmap]
rs2718934	0.92[CEU][hapmap]
rs2718941	0.92[CEU][hapmap]
rs2725854	0.88[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];0.86[JPT][hapmap];0.94[LWK][hapmap];0.96[MKK][hapmap];0.85[TSI][hapmap]
rs2725856	0.86[CHB][hapmap]
rs2725862	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2947021	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs34755898	0.88[ASN][1000 genomes]
rs35497167	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35863560	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3784552	0.87[CEU][hapmap];0.90[CHB][hapmap];0.92[JPT][hapmap];0.85[ASN][1000 genomes]
rs3817406	0.88[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.87[ASN][1000 genomes]
rs3985758	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4774859	0.87[ASN][1000 genomes]
rs62022122	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62022127	0.92[ASN][1000 genomes]
rs62022133	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6493856	0.88[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.92[GIH][hapmap];0.92[JPT][hapmap];0.91[TSI][hapmap];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6493858	0.88[CEU][hapmap];0.95[CHB][hapmap];0.85[CHD][hapmap];0.92[GIH][hapmap];0.92[JPT][hapmap];0.89[TSI][hapmap];0.87[ASN][1000 genomes]
rs7170307	0.81[CEU][hapmap];0.82[CHB][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap]
rs7174892	0.90[ASN][1000 genomes]
rs7181235	0.95[CHB][hapmap]
rs7181320	0.81[CEU][hapmap]
rs795786	0.82[CHB][hapmap]
rs795791	0.91[CHB][hapmap]
rs795800	0.95[CHB][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12905782	FLJ12994	cis	multi-tissue	Pritchard

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56637800-56657000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr15:56644000-56656800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr15:56649600-56656800	Weak transcription	HMEC	breast

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