Variant report

Variant	rs2718908
Chromosome Location	chr15:56631437-56631438
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11633374	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12900678	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12905782	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12908734	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1402177	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1549452	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1554410	0.81[EUR][1000 genomes]
rs17819438	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2114183	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2303441	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2460646	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2465973	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2682012	0.85[ASN][1000 genomes]
rs2682019	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2682021	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2682023	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2718901	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2725854	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2725862	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2947020	0.81[ASN][1000 genomes]
rs35497167	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35863560	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3784552	0.81[EUR][1000 genomes]
rs3817406	0.81[EUR][1000 genomes]
rs3985758	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4774859	0.81[EUR][1000 genomes]
rs62022122	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62022127	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62022133	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6493856	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6493858	0.81[EUR][1000 genomes]
rs7496402	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833019	chr15:56486029-56649933	Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56620800-56637600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr15:56630600-56632000	Weak transcription	Stomach Mucosa	stomach
3	chr15:56630600-56633200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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