Variant report

Variant	rs35863560
Chromosome Location	chr12:118063313-118063314
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11630363	0.88[EUR][1000 genomes]
rs11633374	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12900678	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12905782	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12908734	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1402177	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1477590	0.86[ASN][1000 genomes]
rs1549452	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1554410	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17819438	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2114183	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2303441	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2460646	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2465973	0.81[EUR][1000 genomes]
rs2682019	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2682021	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2682023	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2718901	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2718908	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2725854	0.84[EUR][1000 genomes]
rs2725862	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34755898	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35497167	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3784552	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3817406	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3985758	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4774859	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62022122	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62022127	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62022133	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6493856	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6493858	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7170307	0.82[EUR][1000 genomes]
rs7174892	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7496402	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832527	chr12:117974007-118110244	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:118061000-118075000	Weak transcription	HUVEC	blood vessel

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