Variant report

Variant	rs2947020
Chromosome Location	chr15:56602380-56602381
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1402177	0.88[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs2114183	0.80[AFR][1000 genomes]
rs2249090	0.81[ASN][1000 genomes]
rs2460650	0.84[ASN][1000 genomes]
rs2465973	0.91[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs2682012	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2682019	0.84[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs2682021	0.87[ASN][1000 genomes]
rs2682023	0.86[ASN][1000 genomes]
rs2682051	0.83[ASN][1000 genomes]
rs2682053	0.81[ASN][1000 genomes]
rs2713931	0.84[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs2713936	0.81[ASN][1000 genomes]
rs2718901	0.87[ASN][1000 genomes]
rs2718908	0.81[ASN][1000 genomes]
rs2725854	0.88[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs2725862	0.86[ASN][1000 genomes]
rs2947021	0.87[ASN][1000 genomes]
rs35497167	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833019	chr15:56486029-56649933	Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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