Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12900678	0.89[AFR][1000 genomes]
rs1402177	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs1829542	0.82[AFR][1000 genomes]
rs2114183	0.82[AFR][1000 genomes]
rs2249090	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2460650	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2465973	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2682012	0.86[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs2682019	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs2682021	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs2682023	0.82[AMR][1000 genomes]
rs2682049	0.82[AMR][1000 genomes]
rs2682051	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2682053	0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2682054	0.83[AMR][1000 genomes]
rs2713926	0.82[AFR][1000 genomes]
rs2713933	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2713936	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2713938	0.82[AFR][1000 genomes]
rs2725854	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2947020	0.84[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs2947021	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35497167	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833019	chr15:56486029-56649933	Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv569547	chr15:56504598-56572176	ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56548600-56553800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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