Variant report

Variant	rs2682012
Chromosome Location	chr15:56600095-56600096
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs11630363	0.95[CHB][hapmap];0.87[JPT][hapmap]
rs11855094	0.95[CHB][hapmap]
rs12900678	1.00[CHB][hapmap];0.88[YRI][hapmap]
rs12905782	1.00[CHB][hapmap];0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs12905899	1.00[YRI][hapmap]
rs12911094	1.00[YRI][hapmap]
rs1402177	0.91[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs1477590	0.95[CHB][hapmap];0.93[JPT][hapmap]
rs1549452	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs16976890	0.95[CHB][hapmap]
rs17819438	1.00[CHB][hapmap];0.80[JPT][hapmap]
rs2114183	0.82[AFR][1000 genomes]
rs2119937	1.00[YRI][hapmap]
rs2249090	0.91[CHB][hapmap];0.93[JPT][hapmap];0.84[ASN][1000 genomes]
rs2303441	1.00[CHB][hapmap];0.86[JPT][hapmap];0.89[YRI][hapmap]
rs2460646	0.83[ASN][1000 genomes]
rs2460650	1.00[CHB][hapmap];0.93[JPT][hapmap];0.87[ASN][1000 genomes]
rs2465973	0.93[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs2554287	0.95[CHB][hapmap]
rs2682019	0.86[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs2682021	0.90[ASN][1000 genomes]
rs2682023	0.90[ASN][1000 genomes]
rs2682051	0.95[CHB][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs2682053	1.00[CHB][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs2713931	0.86[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs2713933	0.95[CHB][hapmap];0.87[JPT][hapmap]
rs2713936	0.95[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];0.84[ASN][1000 genomes]
rs2713941	1.00[YRI][hapmap]
rs2718901	0.90[ASN][1000 genomes]
rs2718908	0.85[ASN][1000 genomes]
rs2718921	0.95[CHB][hapmap];0.89[YRI][hapmap]
rs2718941	1.00[YRI][hapmap]
rs2725854	0.95[CHB][hapmap];0.88[YRI][hapmap];0.91[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs2725856	0.86[CHB][hapmap]
rs2725862	0.90[ASN][1000 genomes]
rs2947020	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2947021	1.00[CHB][hapmap];0.93[JPT][hapmap];0.89[ASN][1000 genomes]
rs35497167	0.82[AFR][1000 genomes]
rs3784552	0.86[CHB][hapmap];0.87[JPT][hapmap];0.89[YRI][hapmap]
rs3817406	1.00[CHB][hapmap];0.86[JPT][hapmap];0.89[YRI][hapmap]
rs6493856	0.95[CHB][hapmap];0.85[JPT][hapmap]
rs6493858	0.95[CHB][hapmap];0.86[JPT][hapmap]
rs7170307	0.82[CHB][hapmap];0.93[JPT][hapmap]
rs7181235	0.95[CHB][hapmap]
rs7181320	0.88[YRI][hapmap]
rs7496025	1.00[YRI][hapmap]
rs795786	0.82[CHB][hapmap]
rs795791	0.91[CHB][hapmap]
rs795800	0.95[CHB][hapmap]
rs8024031	1.00[YRI][hapmap]
rs9672886	1.00[YRI][hapmap]
rs9672928	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833019	chr15:56486029-56649933	Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56599200-56600800	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr15:56599200-56600800	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr15:56599200-56601000	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr15:56599200-56601000	Enhancers	Brain Germinal Matrix	brain
5	chr15:56599400-56600600	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr15:56599400-56600600	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr15:56599400-56600800	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr15:56599600-56600600	Enhancers	H1 Cell Line	embryonic stem cell
9	chr15:56599800-56600800	Enhancers	ES-I3 Cell Line	embryonic stem cell

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