Variant report

Variant	rs11852922
Chromosome Location	chr15:79286899-79286900
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:79286840..79288798-chr15:79290749..79294640,3	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12902783	0.99[ASN][1000 genomes]
rs3743200	0.80[EUR][1000 genomes]
rs3743201	0.80[EUR][1000 genomes]
rs3784528	0.83[EUR][1000 genomes]
rs3784530	1.00[ASN][1000 genomes]
rs3784531	1.00[ASN][1000 genomes]
rs3784533	1.00[ASN][1000 genomes]
rs3825928	0.80[EUR][1000 genomes]
rs4352018	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55942507	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56057581	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56267258	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56378114	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6495356	0.81[EUR][1000 genomes]
rs6495358	1.00[ASN][1000 genomes]
rs8036107	0.80[EUR][1000 genomes]
rs894782	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33573	chr15:79053484-79293881	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv904433	chr15:79243571-79310288	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv3425828	chr15:79283497-79287695	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:79244000-79288000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr15:79276400-79288600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr15:79276400-79309200	Weak transcription	Right Atrium	heart
4	chr15:79278400-79290400	Enhancers	Fetal Intestine Small	intestine
5	chr15:79279400-79287000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr15:79279600-79291000	Enhancers	Fetal Intestine Large	intestine
7	chr15:79281600-79290200	Weak transcription	Brain Substantia Nigra	brain
8	chr15:79281800-79296000	Weak transcription	Primary B cells from cord blood	blood
9	chr15:79281800-79296600	Weak transcription	Esophagus	oesophagus
10	chr15:79281800-79296600	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr15:79282200-79288200	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr15:79282400-79289200	Weak transcription	HMEC	breast
13	chr15:79282600-79289000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr15:79282600-79289200	Weak transcription	NH-A	brain
15	chr15:79283000-79295000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr15:79283800-79288200	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr15:79284000-79287000	Enhancers	Lung	lung
18	chr15:79284200-79288800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr15:79284600-79288400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr15:79284600-79289200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr15:79285000-79287000	Enhancers	Primary monocytes fromperipheralblood	blood
22	chr15:79285200-79287400	Enhancers	Primary hematopoietic stem cells short term culture	blood
23	chr15:79285200-79290800	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr15:79285400-79287000	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr15:79285400-79287200	Enhancers	Fetal Lung	lung
26	chr15:79285600-79287000	Flanking Active TSS	HepG2	liver
27	chr15:79285600-79289000	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr15:79285600-79290400	Weak transcription	Brain Anterior Caudate	brain
29	chr15:79285600-79294400	Weak transcription	HSMM	muscle
30	chr15:79285800-79287000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
31	chr15:79285800-79288000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr15:79285800-79288000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr15:79285800-79288200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr15:79285800-79290200	Weak transcription	GM12878-XiMat	blood
35	chr15:79285800-79294600	Weak transcription	Brain Angular Gyrus	brain
36	chr15:79285800-79298400	Weak transcription	Brain Cingulate Gyrus	brain
37	chr15:79286000-79288200	Weak transcription	Spleen	Spleen
38	chr15:79286400-79287200	Strong transcription	Brain Hippocampus Middle	brain
39	chr15:79286400-79290800	Weak transcription	Placenta	Placenta
40	chr15:79286800-79287000	Enhancers	Fetal Kidney	kidney
41	chr15:79286800-79288000	Weak transcription	H1 Cell Line	embryonic stem cell
42	chr15:79286800-79288000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr15:79286800-79288000	Weak transcription	Fetal Muscle Trunk	muscle
44	chr15:79286800-79288200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr15:79286800-79289200	Weak transcription	HSMMtube	muscle
46	chr15:79286800-79290200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr15:79286800-79290400	Weak transcription	Monocytes-CD14+_RO01746	blood

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