Variant report

Variant	rs4352018
Chromosome Location	chr15:79290146-79290147
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:79287783..79290330-chr15:79294942..79296932,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11852922	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55942507	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56057581	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56267258	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56378114	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs894782	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33573	chr15:79053484-79293881	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv904433	chr15:79243571-79310288	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:79276400-79309200	Weak transcription	Right Atrium	heart
2	chr15:79278400-79290400	Enhancers	Fetal Intestine Small	intestine
3	chr15:79279600-79291000	Enhancers	Fetal Intestine Large	intestine
4	chr15:79281600-79290200	Weak transcription	Brain Substantia Nigra	brain
5	chr15:79281800-79296000	Weak transcription	Primary B cells from cord blood	blood
6	chr15:79281800-79296600	Weak transcription	Esophagus	oesophagus
7	chr15:79281800-79296600	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr15:79283000-79295000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr15:79285200-79290800	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr15:79285600-79290400	Weak transcription	Brain Anterior Caudate	brain
11	chr15:79285600-79294400	Weak transcription	HSMM	muscle
12	chr15:79285800-79290200	Weak transcription	GM12878-XiMat	blood
13	chr15:79285800-79294600	Weak transcription	Brain Angular Gyrus	brain
14	chr15:79285800-79298400	Weak transcription	Brain Cingulate Gyrus	brain
15	chr15:79286400-79290800	Weak transcription	Placenta	Placenta
16	chr15:79286800-79290200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr15:79286800-79290400	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr15:79287000-79290400	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr15:79287000-79290400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr15:79287200-79325800	Weak transcription	Brain Hippocampus Middle	brain
21	chr15:79288000-79291200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr15:79288000-79293600	Strong transcription	Pancreatic Islets	Pancreatic Islet
23	chr15:79288200-79290800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr15:79288400-79295400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr15:79288800-79290200	Weak transcription	Fetal Lung	lung
26	chr15:79288800-79290200	Weak transcription	Lung	lung
27	chr15:79288800-79291000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr15:79289000-79290400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr15:79289000-79290400	Weak transcription	Spleen	Spleen
30	chr15:79289000-79291400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr15:79289000-79296600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr15:79289200-79292000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
33	chr15:79289400-79290200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr15:79289400-79290400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
35	chr15:79289400-79291800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr15:79289400-79292000	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr15:79289400-79292400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr15:79289400-79293200	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr15:79289400-79297000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
40	chr15:79289600-79290600	Weak transcription	HSMMtube	muscle
41	chr15:79289600-79291600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr15:79289600-79291600	Enhancers	HepG2	liver
43	chr15:79289600-79295000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr15:79289600-79295000	Weak transcription	HMEC	breast
45	chr15:79289600-79295200	Weak transcription	NH-A	brain
46	chr15:79289800-79291600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr15:79290000-79290400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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