Variant report

Variant	rs11853115
Chromosome Location	chr15:60427046-60427047
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11071502	1.00[AMR][1000 genomes]
rs11071506	1.00[AFR][1000 genomes]
rs1481844	1.00[AMR][1000 genomes]
rs1614077	1.00[AMR][1000 genomes]
rs1680214	1.00[AMR][1000 genomes]
rs335778	1.00[AMR][1000 genomes]
rs4775237	1.00[AMR][1000 genomes]
rs73431239	1.00[AMR][1000 genomes]
rs73431245	1.00[AMR][1000 genomes]
rs994142	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904280	chr15:60042722-60524025	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60421800-60429200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr15:60421800-60429600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr15:60422800-60429200	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr15:60423000-60428200	Weak transcription	HSMM	muscle
5	chr15:60426800-60430000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr15:60427000-60430000	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr15:60427000-60435000	Weak transcription	H9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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