Variant report

Variant	rs1481844
Chromosome Location	chr15:60358758-60358759
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11071502	1.00[AMR][1000 genomes]
rs11853115	1.00[AMR][1000 genomes]
rs1614077	1.00[AMR][1000 genomes]
rs1680214	1.00[AMR][1000 genomes]
rs2554008	0.86[AFR][1000 genomes]
rs335778	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4775237	1.00[AMR][1000 genomes]
rs73431239	1.00[AMR][1000 genomes]
rs73431245	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904280	chr15:60042722-60524025	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv833028	chr15:60227565-60418112	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60354600-60362600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr15:60355400-60362600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr15:60357400-60360000	Enhancers	Primary hematopoietic stem cells	blood
4	chr15:60357600-60358800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr15:60357800-60358800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr15:60357800-60359600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr15:60357800-60370000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr15:60358000-60359000	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr15:60358600-60369800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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