Variant report

Variant	rs11853382
Chromosome Location	chr15:83541933-83541934
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:83540274..83544098-chr15:83544468..83546572,4	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11852370	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11856497	1.00[AMR][1000 genomes]
rs11856798	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17158172	1.00[AMR][1000 genomes]
rs58782831	1.00[AMR][1000 genomes]
rs59286119	1.00[AMR][1000 genomes]
rs7171702	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7174267	1.00[AMR][1000 genomes]
rs7178757	1.00[AMR][1000 genomes]
rs73446957	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73446974	1.00[AMR][1000 genomes]
rs73446978	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469557	chr15:83417763-83560629	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
2	nsv482340	chr15:83417763-83560629	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
3	nsv471687	chr15:83417764-83560629	Enhancers Flanking Active TSS Genic enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83504600-83549400	Weak transcription	Psoas Muscle	Psoas
2	chr15:83506200-83543800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr15:83514400-83542800	Weak transcription	Primary T cells from cord blood	blood
4	chr15:83519800-83544400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr15:83520000-83543600	Weak transcription	HSMM	muscle
6	chr15:83520000-83549800	Weak transcription	Brain Cingulate Gyrus	brain
7	chr15:83520000-83563800	Weak transcription	Brain Hippocampus Middle	brain
8	chr15:83520200-83542000	Weak transcription	Brain Angular Gyrus	brain
9	chr15:83520200-83547000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr15:83522400-83543400	Weak transcription	Fetal Muscle Trunk	muscle
11	chr15:83522600-83542200	Weak transcription	Fetal Muscle Leg	muscle
12	chr15:83523600-83558000	Weak transcription	Esophagus	oesophagus
13	chr15:83524600-83567800	Weak transcription	Left Ventricle	heart
14	chr15:83524800-83563800	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr15:83528000-83542000	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr15:83528000-83544000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr15:83537000-83551400	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr15:83538000-83549600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr15:83539000-83542000	Genic enhancers	Pancreas	Pancrea
20	chr15:83539200-83542000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr15:83540000-83543000	Weak transcription	Fetal Intestine Large	intestine
22	chr15:83540000-83544000	Weak transcription	Osteobl	bone
23	chr15:83540000-83544200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
24	chr15:83540200-83544000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr15:83540200-83544200	Weak transcription	Fetal Intestine Small	intestine
26	chr15:83540200-83545400	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr15:83540400-83543000	Strong transcription	Skeletal Muscle Male	skeletal muscle
28	chr15:83540400-83544600	Weak transcription	HepG2	liver
29	chr15:83540600-83573200	Weak transcription	Right Atrium	heart
30	chr15:83540800-83544000	Strong transcription	Stomach Smooth Muscle	stomach
31	chr15:83540800-83563600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr15:83541000-83542000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr15:83541000-83542000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr15:83541000-83542400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr15:83541000-83566200	Weak transcription	Spleen	Spleen
36	chr15:83541200-83542200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr15:83541200-83545600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr15:83541400-83542400	Enhancers	Right Ventricle	heart
39	chr15:83541400-83543000	Strong transcription	Brain Anterior Caudate	brain
40	chr15:83541400-83543000	Strong transcription	Fetal Stomach	stomach
41	chr15:83541400-83543200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr15:83541400-83544200	Strong transcription	Liver	Liver
43	chr15:83541600-83542800	Enhancers	Fetal Heart	heart
44	chr15:83541600-83543600	Strong transcription	Aorta	Aorta
45	chr15:83541600-83544200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
46	chr15:83541600-83545000	Weak transcription	Colon Smooth Muscle	Colon
47	chr15:83541800-83542400	Strong transcription	HSMMtube	muscle
48	chr15:83541800-83544000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr15:83541800-83544000	Strong transcription	Gastric	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links