Variant report

Variant	rs11854176
Chromosome Location	chr15:59731130-59731131
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr15:59729645-59731187	A549	lung:	n/a	chr15:59730613-59730623
2	MAX	chr15:59729565-59731594	A549	lung:	n/a	chr15:59730613-59730623
3	MTA3	chr15:59730514-59731173	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
FAM81A	TF binding region

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs28479551	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs62013072	0.89[EUR][1000 genomes]
rs7180626	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7180641	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv934082	chr15:59608605-59733211	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
3	nsv904276	chr15:59648633-59743010	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	n/a
4	nsv904278	chr15:59705005-59784648	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59728800-59731800	Active TSS	Brain Inferior Temporal Lobe	brain
2	chr15:59729200-59731400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
3	chr15:59729400-59731800	Active TSS	Brain Angular Gyrus	brain
4	chr15:59729600-59731600	Active TSS	Fetal Brain Female	brain
5	chr15:59729800-59731200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
6	chr15:59730000-59731200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
7	chr15:59730000-59731200	Active TSS	Brain Cingulate Gyrus	brain
8	chr15:59730000-59731200	Active TSS	Colon Smooth Muscle	Colon
9	chr15:59730000-59731200	Active TSS	Fetal Brain Male	brain
10	chr15:59730000-59731200	Active TSS	Rectal Smooth Muscle	rectum
11	chr15:59730200-59731200	Enhancers	Liver	Liver
12	chr15:59730200-59731200	Bivalent Enhancer	NHDF-Ad	bronchial
13	chr15:59730200-59731400	Bivalent/Poised TSS	NH-A	brain
14	chr15:59730400-59731200	Flanking Active TSS	Primary B cells from cord blood	blood
15	chr15:59730400-59731200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr15:59730600-59731200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr15:59730600-59731200	Flanking Active TSS	Brain Anterior Caudate	brain
18	chr15:59730600-59731200	Flanking Bivalent TSS/Enh	Fetal Intestine Small	intestine
19	chr15:59730600-59731200	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
20	chr15:59730600-59731200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
21	chr15:59730600-59731200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
22	chr15:59730600-59731200	Flanking Active TSS	Stomach Smooth Muscle	stomach
23	chr15:59730600-59731200	Flanking Bivalent TSS/Enh	NHEK	skin
24	chr15:59730600-59731400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr15:59730600-59731600	Flanking Active TSS	Duodenum Mucosa	Duodenum
26	chr15:59730800-59731200	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
27	chr15:59730800-59731200	Active TSS	Right Ventricle	heart
28	chr15:59730800-59731400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr15:59730800-59731600	Flanking Active TSS	Fetal Heart	heart
30	chr15:59730800-59731600	Active TSS	Fetal Kidney	kidney
31	chr15:59730800-59731600	Flanking Active TSS	GM12878-XiMat	blood
32	chr15:59730800-59731600	Flanking Active TSS	Hela-S3	cervix
33	chr15:59730800-59754800	Weak transcription	Aorta	Aorta
34	chr15:59731000-59731200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr15:59731000-59731200	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr15:59731000-59731200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
37	chr15:59731000-59731200	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
38	chr15:59731000-59731200	Enhancers	Primary B cells from peripheral blood	blood
39	chr15:59731000-59731200	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
40	chr15:59731000-59731200	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr15:59731000-59731200	Enhancers	Cortex derived primary cultured neurospheres	brain
42	chr15:59731000-59731200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr15:59731000-59731200	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr15:59731000-59731200	Enhancers	Adipose Nuclei	Adipose
45	chr15:59731000-59731200	Active TSS	Brain Germinal Matrix	brain
46	chr15:59731000-59731200	Active TSS	Brain Hippocampus Middle	brain
47	chr15:59731000-59731200	Enhancers	Colonic Mucosa	Colon
48	chr15:59731000-59731200	Bivalent Enhancer	Fetal Intestine Large	intestine
49	chr15:59731000-59731200	Enhancers	Pancreatic Islets	Pancreatic Islet
50	chr15:59731000-59731200	Bivalent/Poised TSS	Fetal Muscle Trunk	muscle

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