Variant report

Variant	rs7180626
Chromosome Location	chr15:59736320-59736321
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11854176	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62013072	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7180641	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8024853	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv904276	chr15:59648633-59743010	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	n/a
3	nsv904278	chr15:59705005-59784648	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59730800-59754800	Weak transcription	Aorta	Aorta
2	chr15:59731000-59737200	Weak transcription	Ovary	ovary
3	chr15:59731000-59739800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr15:59731200-59737400	Weak transcription	Rectal Smooth Muscle	rectum
5	chr15:59731200-59740000	Weak transcription	Stomach Mucosa	stomach
6	chr15:59731400-59737200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr15:59731400-59737400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr15:59731400-59752200	Weak transcription	A549	lung
9	chr15:59731600-59753600	Weak transcription	Fetal Brain Female	brain
10	chr15:59731800-59753400	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr15:59732000-59742000	Weak transcription	Fetal Heart	heart
12	chr15:59732200-59744600	Weak transcription	Hela-S3	cervix
13	chr15:59734000-59738600	Weak transcription	Duodenum Mucosa	Duodenum
14	chr15:59734000-59739400	Weak transcription	Spleen	Spleen
15	chr15:59734200-59737400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr15:59735400-59753800	Weak transcription	Primary B cells from cord blood	blood
17	chr15:59735600-59736600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
18	chr15:59735800-59736400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr15:59735800-59736400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr15:59735800-59736400	Enhancers	Fetal Kidney	kidney
21	chr15:59735800-59737600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr15:59735800-59738800	Weak transcription	Primary B cells from peripheral blood	blood
23	chr15:59736000-59736400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
24	chr15:59736000-59736400	Enhancers	Brain Angular Gyrus	brain
25	chr15:59736000-59736400	Enhancers	GM12878-XiMat	blood
26	chr15:59736000-59737000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr15:59736200-59736800	Enhancers	Fetal Brain Male	brain

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