Variant report

Variant	rs11854184
Chromosome Location	chr15:49293194-49293195
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:49277481..49279155-chr15:49292089..49293616,2	K562	blood:

rs_ID	r²[population]
rs12900819	1.00[YRI][hapmap]
rs12901353	0.90[LWK][hapmap]
rs12914876	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17393761	1.00[YRI][hapmap]
rs17435932	0.90[LWK][hapmap]
rs34748066	0.90[LWK][hapmap]
rs4775794	1.00[YRI][hapmap];0.85[AFR][1000 genomes]

SNP	Gene	Cis/trans	Tissue	Source
rs11854184	DUOX2	cis	cerebellum	SCAN

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49268800-49309200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr15:49277400-49299400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr15:49280000-49293400	Strong transcription	Adipose Nuclei	Adipose
4	chr15:49280000-49294200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr15:49280400-49293200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr15:49280400-49294400	Strong transcription	Placenta	Placenta
7	chr15:49281600-49293200	Strong transcription	HUES64 Cell Line	embryonic stem cell
8	chr15:49281600-49293400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr15:49281600-49293600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr15:49281600-49293800	Strong transcription	Primary hematopoietic stem cells	blood
11	chr15:49282000-49293400	Strong transcription	Monocytes-CD14+_RO01746	blood
12	chr15:49282000-49294000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr15:49282200-49293200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr15:49282200-49293400	Strong transcription	Duodenum Smooth Muscle	Duodenum
15	chr15:49282200-49294800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
16	chr15:49282200-49294800	Strong transcription	Primary B cells from cord blood	blood
17	chr15:49282200-49294800	Strong transcription	Primary T helper cells fromperipheralblood	blood
18	chr15:49282400-49293200	Strong transcription	Fetal Intestine Large	intestine
19	chr15:49282600-49293200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
20	chr15:49282600-49293200	Strong transcription	Primary T cells fromperipheralblood	blood
21	chr15:49282600-49293200	Strong transcription	Rectal Mucosa Donor 31	rectum
22	chr15:49282600-49293400	Strong transcription	Primary T helper cells PMA-I stimulated	--
23	chr15:49282800-49293200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr15:49282800-49293400	Strong transcription	Fetal Muscle Leg	muscle
25	chr15:49282800-49333400	Weak transcription	A549	lung
26	chr15:49283200-49293200	Strong transcription	Fetal Lung	lung
27	chr15:49283200-49294800	Strong transcription	Primary B cells from peripheral blood	blood
28	chr15:49283400-49293200	Strong transcription	HUES6 Cell Line	embryonic stem cell
29	chr15:49283400-49293400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr15:49283600-49293200	Strong transcription	Muscle Satellite Cultured Cells	--
31	chr15:49283600-49337600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
32	chr15:49283800-49293400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr15:49284600-49293400	Strong transcription	Primary neutrophils fromperipheralblood	blood
34	chr15:49285000-49299200	Weak transcription	Colonic Mucosa	Colon
35	chr15:49285000-49299400	Weak transcription	Right Ventricle	heart
36	chr15:49285000-49302800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr15:49285000-49329000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr15:49285200-49298200	Weak transcription	Colon Smooth Muscle	Colon
39	chr15:49285200-49300200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
40	chr15:49285400-49297200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr15:49285600-49297200	Weak transcription	Fetal Intestine Small	intestine
42	chr15:49285600-49297200	Weak transcription	Fetal Stomach	stomach
43	chr15:49286200-49293400	Strong transcription	HUES48 Cell Line	embryonic stem cell
44	chr15:49286400-49293200	Strong transcription	Sigmoid Colon	Sigmoid Colon
45	chr15:49286600-49293200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr15:49286600-49293200	Strong transcription	Primary monocytes fromperipheralblood	blood
47	chr15:49286600-49293200	Strong transcription	Brain Anterior Caudate	brain
48	chr15:49286600-49293400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr15:49286600-49294400	Strong transcription	Skeletal Muscle Female	skeletal muscle
50	chr15:49287000-49293600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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