Variant report

Variant	rs17393761
Chromosome Location	chr15:49376891-49376892
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:49376062..49378863-chr15:49460544..49462985,2	K562	blood:
2	chr15:49370775..49373012-chr15:49376032..49378415,2	K562	blood:
3	chr15:49169547..49171299-chr15:49375686..49377203,2	K562	blood:

Variant related genes	Relation type
ENSG00000185634	Chromatin interaction
ENSG00000156958	Chromatin interaction
ENSG00000264210	Chromatin interaction
ENSG00000235883	Chromatin interaction
ENSG00000255302	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11854039	0.81[ASN][1000 genomes]
rs11854184	1.00[YRI][hapmap]
rs11854557	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11857773	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11858814	1.00[CHB][hapmap];0.82[JPT][hapmap];0.85[AFR][1000 genomes]
rs12899422	0.85[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs12900819	0.82[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap]
rs12900838	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12901353	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs12902271	0.91[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs12905094	0.91[CHB][hapmap];0.85[JPT][hapmap];0.85[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs17435932	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs17472989	0.91[CHB][hapmap];0.85[JPT][hapmap];0.85[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs2289389	0.91[CHB][hapmap];0.85[JPT][hapmap];0.85[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs34562714	0.81[ASN][1000 genomes]
rs34748066	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs4775794	0.82[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs4775806	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs55645655	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55979115	0.83[ASN][1000 genomes]
rs62009762	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs71467664	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7497335	0.82[ASN][1000 genomes]
rs8043493	0.91[CHB][hapmap];0.85[JPT][hapmap];0.85[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs9672848	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49369200-49377800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr15:49372200-49381000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr15:49375800-49377200	Enhancers	Brain Inferior Temporal Lobe	brain
4	chr15:49375800-49377800	Enhancers	Brain Substantia Nigra	brain
5	chr15:49375800-49378800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr15:49376000-49377600	Weak transcription	Brain Angular Gyrus	brain
7	chr15:49376200-49377400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr15:49376200-49378000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr15:49376200-49395200	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr15:49376400-49377200	Weak transcription	Brain Cingulate Gyrus	brain
11	chr15:49376400-49377200	Weak transcription	Brain Hippocampus Middle	brain
12	chr15:49376400-49377400	Enhancers	NHDF-Ad	bronchial
13	chr15:49376400-49378000	Weak transcription	Fetal Lung	lung
14	chr15:49376400-49397800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr15:49376600-49391600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr15:49376600-49397600	Weak transcription	NHLF	lung
17	chr15:49376800-49377800	Weak transcription	Placenta	Placenta
18	chr15:49376800-49378000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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