Variant report

Variant	rs7497335
Chromosome Location	chr15:49485511-49485512
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:49467721..49470764-chr15:49484555..49487605,3	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10519224	0.92[AFR][1000 genomes]
rs10519225	0.92[AFR][1000 genomes]
rs11853969	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11854039	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11854557	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11855798	0.92[AFR][1000 genomes]
rs11857515	0.81[AFR][1000 genomes]
rs11857773	0.84[ASN][1000 genomes]
rs11858814	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12591300	0.89[AFR][1000 genomes]
rs12899422	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12900838	0.82[ASN][1000 genomes]
rs12901353	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12901929	0.92[AFR][1000 genomes]
rs12902096	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12902271	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12905094	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12905477	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12914876	0.81[AFR][1000 genomes]
rs17393761	0.82[ASN][1000 genomes]
rs17435932	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17472989	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1961393	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2289389	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34562714	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34748066	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs36023246	0.92[AFR][1000 genomes]
rs36100631	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4774538	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4775806	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4775808	0.89[AFR][1000 genomes]
rs55979115	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62009762	0.86[ASN][1000 genomes]
rs62009834	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs71467664	0.82[ASN][1000 genomes]
rs7180168	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8029687	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8033184	0.80[EUR][1000 genomes]
rs8043493	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7497335	COPS2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49463200-49508200	Weak transcription	Ovary	ovary
2	chr15:49463600-49494400	Weak transcription	Fetal Thymus	thymus
3	chr15:49463600-49517600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr15:49463600-49527800	Weak transcription	HSMM	muscle
5	chr15:49463600-49540200	Weak transcription	Colonic Mucosa	Colon
6	chr15:49464000-49491600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr15:49464400-49493800	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr15:49464400-49493800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr15:49464400-49500000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr15:49465200-49494000	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr15:49465400-49508200	Weak transcription	Hela-S3	cervix
12	chr15:49467600-49494200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr15:49468400-49494400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr15:49472800-49497200	Weak transcription	Brain Anterior Caudate	brain
15	chr15:49474800-49490200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr15:49478000-49493800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr15:49478000-49494400	Weak transcription	Primary hematopoietic stem cells	blood
18	chr15:49478000-49496000	Weak transcription	Primary T cells from cord blood	blood
19	chr15:49478400-49497400	Weak transcription	Primary B cells from cord blood	blood
20	chr15:49480000-49510600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr15:49480200-49494200	Weak transcription	Fetal Intestine Small	intestine
22	chr15:49480200-49494400	Weak transcription	Lung	lung
23	chr15:49480200-49500200	Weak transcription	Spleen	Spleen
24	chr15:49480200-49502000	Weak transcription	Aorta	Aorta
25	chr15:49480200-49503800	Weak transcription	Esophagus	oesophagus
26	chr15:49480400-49491200	Weak transcription	NHDF-Ad	bronchial
27	chr15:49480600-49491000	Weak transcription	Left Ventricle	heart
28	chr15:49480600-49491200	Weak transcription	NHLF	lung
29	chr15:49480600-49491400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr15:49480600-49491600	Weak transcription	Osteobl	bone
31	chr15:49480600-49503800	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr15:49480800-49491000	Weak transcription	Psoas Muscle	Psoas
33	chr15:49480800-49491200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr15:49481600-49498600	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr15:49482200-49494000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr15:49482600-49487800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
37	chr15:49483000-49487800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr15:49483000-49491200	Weak transcription	Adipose Nuclei	Adipose
39	chr15:49483200-49494200	Weak transcription	Primary monocytes fromperipheralblood	blood
40	chr15:49483400-49487800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr15:49483400-49493600	Weak transcription	Monocytes-CD14+_RO01746	blood
42	chr15:49483600-49497000	Weak transcription	HUES64 Cell Line	embryonic stem cell
43	chr15:49484000-49494000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr15:49484200-49519400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
45	chr15:49484400-49494200	Weak transcription	Duodenum Mucosa	Duodenum
46	chr15:49484400-49497000	Weak transcription	Fetal Brain Male	brain
47	chr15:49485200-49494200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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