Variant report

Variant	rs8033184
Chromosome Location	chr15:49658889-49658890
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:18)
CpG islands
(count:61)
Chromatin interactive
region (count:1)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:18 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:49658851-49658967	Gliobla	brain:	n/a	n/a
2	POLR2A	chr15:49658782-49658912	GM12878	blood:	n/a	n/a
3	POLR2A	chr15:49658855-49658920	GM12878	blood:	n/a	n/a
4	POLR2A	chr15:49658855-49659061	A549	lung:	n/a	n/a
5	GABPA	chr15:49658812-49658912	HepG2	liver:	n/a	n/a
6	POLR2A	chr15:49658877-49659022	Hela-S3	cervix:	n/a	n/a
7	POLR2A	chr15:49658777-49659040	ProgFib	skin:	n/a	n/a
8	POLR2A	chr15:49658808-49658914	GM12878	blood:	n/a	n/a
9	POLR2A	chr15:49658852-49659097	MCF-7	breast:	n/a	n/a
10	POLR2A	chr15:49658813-49658933	A549	lung:	n/a	n/a
11	POLR2A	chr15:49658826-49658933	A549	lung:	n/a	n/a
12	POLR2A	chr15:49658852-49659123	MCF-7	breast:	n/a	n/a
13	CCNT2	chr15:49658879-49658997	K562	blood:	n/a	n/a
14	POLR2A	chr15:49658857-49658889	HUVEC	blood vessel:	n/a	n/a
15	POLR2A	chr15:49658854-49659084	MCF-7	breast:	n/a	n/a
16	POLR2A	chr15:49658814-49658938	A549	lung:	n/a	n/a
17	POLR2A	chr15:49658790-49658934	A549	lung:	n/a	n/a
18	POLR2A	chr15:49658853-49658927	K562	blood:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr15:49658865-49658915	U87	brain:	n/a
2	chr15:49658865-49658915	HepG2	liver:	n/a
3	chr15:49658865-49658915	H1-hESC	embryonic stem cell:	embryo
4	chr15:49658865-49658915	NHBE	bronchial:	n/a
5	chr15:49658865-49658915	HCPEpiC	choroid plexus:	n/a
6	chr15:49658865-49658915	PANC-1	pancreas:	n/a
7	chr15:49658865-49658915	NHDF-neo	bronchial:	n/a
8	chr15:49658865-49658915	SK-N-MC	brain:	n/a
9	chr15:49658865-49658915	LNCaP	prostate:	n/a
10	chr15:49658865-49658915	HEEpiC	esophagus:	n/a
11	chr15:49658865-49658915	HMEC	breast:	n/a
12	chr15:49658865-49658915	IMR90	lung:	fetal
13	chr15:49658865-49658915	SK-N-SH	brain:	n/a
14	chr15:49658865-49658915	HPAEpiC	pulmonary alveolar:	n/a
15	chr15:49658865-49658915	HCM	heart:	n/a
16	chr15:49658865-49658915	Jurkat	blood:	n/a
17	chr15:49658865-49658915	ProgFib	skin:	n/a
18	chr15:49658865-49658915	AG09319	gingival:	n/a
19	chr15:49658865-49658915	HRE	kidney:	n/a
20	chr15:49658865-49658915	Hepatocyte	liver:	n/a
21	chr15:49658865-49658915	Caco-2	colon:	n/a
22	chr15:49658865-49658915	HIPEpiC	eye:	n/a
23	chr15:49658865-49658915	PFSK-1	brain:	n/a
24	chr15:49658865-49658915	GM12878	blood:	n/a
25	chr15:49658865-49658915	RPTEC	kidney:	n/a
26	chr15:49658865-49658915	HL-60	blood:	n/a
27	chr15:49658865-49658915	GM06990	blood:	n/a
28	chr15:49658865-49658915	HCT-116	colon:	n/a
29	chr15:49658865-49658915	HUVEC	blood vessel:	n/a
30	chr15:49658865-49658915	PrEC	prostate:	n/a
31	chr15:49658865-49658915	NT2-D1	testis:	n/a
32	chr15:49658865-49658915	A549	lung:	n/a
33	chr15:49658865-49658915	BE2_C	brain:	n/a
34	chr15:49658865-49658915	ovcar-3	ovarian:	n/a
35	chr15:49658865-49658915	HEK293	kidney:	embryo
36	chr15:49658865-49658915	ECC-1	luminal epithelium:	n/a
37	chr15:49658865-49658915	AoSMC	blood vessel:	n/a
38	chr15:49658865-49658915	MCF-7	breast:	n/a
39	chr15:49658865-49658915	AG10803	skin:	n/a
40	chr15:49658865-49658915	GM12892	blood:	n/a
41	chr15:49658865-49658915	HNPCEpiC	eye:	n/a
42	chr15:49658865-49658915	SK-N-SH_RA	brain:	n/a
43	chr15:49658865-49658915	BJ	skin:	n/a
44	chr15:49658865-49658915	AG04450	lung:	fetal
45	chr15:49658865-49658915	T-47D	breast:	n/a
46	chr15:49658865-49658915	Hela-S3	cervix:	n/a
47	chr15:49658865-49658915	GM12891	blood:	n/a
48	chr15:49658865-49658915	K562	blood:	n/a
49	chr15:49658865-49658915	AG04449	skin:	fetal
50	chr15:49658865-49658915	HAEpiC	amniotic membrane:	n/a

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:49656837..49659363-chr15:49725678..49728364,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000259531	TF binding region
ENSG00000259531	CpG island
ENSG00000140285	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11853969	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11854039	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11854557	0.89[EUR][1000 genomes]
rs12592508	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12902096	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12905477	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1961393	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34748066	0.80[EUR][1000 genomes]
rs36100631	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4774538	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4775806	0.90[EUR][1000 genomes]
rs62009834	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7180168	0.91[EUR][1000 genomes]
rs7497335	0.80[EUR][1000 genomes]
rs8029687	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039368	chr15:49566094-49764066	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv833002	chr15:49621400-49781799	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv442375	chr15:49652524-49684082	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs8033184	COPS2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links