Variant report

Variant	rs12900838
Chromosome Location	chr15:49382945-49382946
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:49381528..49383469-chr15:49384879..49386598,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11853969	0.81[AFR][1000 genomes]
rs11854039	0.81[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs11854557	0.81[AFR][1000 genomes]
rs11857773	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11858814	0.88[AFR][1000 genomes]
rs12899422	0.88[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs12901353	0.81[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs12902271	0.81[ASN][1000 genomes]
rs12905094	0.88[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs17393761	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17435932	0.81[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs17472989	0.88[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs1961393	0.81[AFR][1000 genomes]
rs2289389	0.88[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs34562714	0.81[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs34748066	0.81[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs36100631	0.81[AFR][1000 genomes]
rs4774538	0.81[AFR][1000 genomes]
rs4775794	0.82[AFR][1000 genomes]
rs4775806	0.81[AFR][1000 genomes]
rs55645655	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55979115	0.81[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs62009762	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62009834	0.81[AFR][1000 genomes]
rs71467664	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7180168	0.81[AFR][1000 genomes]
rs7497335	0.82[ASN][1000 genomes]
rs8043493	0.88[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs9672848	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49376200-49395200	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr15:49376400-49397800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr15:49376600-49391600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr15:49376600-49397600	Weak transcription	NHLF	lung
5	chr15:49378400-49385000	Weak transcription	Placenta	Placenta
6	chr15:49378800-49396800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr15:49381400-49397400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr15:49381400-49402400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr15:49381600-49385200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr15:49381600-49386000	Weak transcription	Brain Hippocampus Middle	brain
11	chr15:49381600-49386000	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr15:49381600-49398000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr15:49381800-49385800	Weak transcription	Brain Substantia Nigra	brain
14	chr15:49381800-49392400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr15:49381800-49395600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr15:49382200-49386000	Weak transcription	Brain Anterior Caudate	brain
17	chr15:49382400-49386000	Weak transcription	Brain Cingulate Gyrus	brain
18	chr15:49382400-49393200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr15:49382600-49402400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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