Variant report

Variant	rs11854267
Chromosome Location	chr15:73865141-73865142
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:73860177..73862340-chr15:73865133..73867086,2	MCF-7	breast:
2	chr15:73864413..73866453-chr15:73873087..73875155,2	MCF-7	breast:
3	chr15:73864124..73866596-chr15:73874759..73877386,2	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11854138	0.85[YRI][hapmap]
rs35100473	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037540	chr15:73712637-73982420	Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73844800-73865200	Weak transcription	Stomach Mucosa	stomach
2	chr15:73847400-73866000	Strong transcription	Adipose Nuclei	Adipose
3	chr15:73847400-73893200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr15:73847600-73865400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr15:73847600-73865800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr15:73847600-73866200	Strong transcription	Liver	Liver
7	chr15:73847600-73882400	Strong transcription	Placenta	Placenta
8	chr15:73848600-73868600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr15:73848600-73868600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr15:73848800-73884800	Strong transcription	Primary T helper cells fromperipheralblood	blood
11	chr15:73848800-73885000	Strong transcription	Primary B cells from cord blood	blood
12	chr15:73850000-73868600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
13	chr15:73850200-73884400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
14	chr15:73850400-73866200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr15:73850400-73870800	Strong transcription	Primary T cells fromperipheralblood	blood
16	chr15:73852200-73874600	Weak transcription	Fetal Heart	heart
17	chr15:73853400-73869000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr15:73853800-73868600	Strong transcription	Primary T cells from cord blood	blood
19	chr15:73855200-73867000	Strong transcription	GM12878-XiMat	blood
20	chr15:73855400-73869200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr15:73855800-73868200	Weak transcription	Psoas Muscle	Psoas
22	chr15:73855800-73872400	Strong transcription	Fetal Stomach	stomach
23	chr15:73856400-73878000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
24	chr15:73857000-73865600	Strong transcription	Rectal Smooth Muscle	rectum
25	chr15:73857200-73865800	Strong transcription	HMEC	breast
26	chr15:73857200-73868600	Strong transcription	A549	lung
27	chr15:73857400-73866000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr15:73857400-73866200	Strong transcription	Cortex derived primary cultured neurospheres	brain
29	chr15:73857400-73866400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr15:73857400-73868000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr15:73857400-73877200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr15:73857400-73884800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr15:73857600-73865800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr15:73857600-73865800	Strong transcription	Left Ventricle	heart
35	chr15:73857600-73866800	Strong transcription	Brain Hippocampus Middle	brain
36	chr15:73857600-73868400	Weak transcription	Right Atrium	heart
37	chr15:73857600-73878000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
38	chr15:73857600-73885000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr15:73857800-73865800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr15:73857800-73865800	Strong transcription	Esophagus	oesophagus
41	chr15:73857800-73865800	Strong transcription	Stomach Smooth Muscle	stomach
42	chr15:73857800-73865800	Strong transcription	NHEK	skin
43	chr15:73857800-73875600	Strong transcription	Primary monocytes fromperipheralblood	blood
44	chr15:73858000-73865800	Strong transcription	Brain Anterior Caudate	brain
45	chr15:73858000-73867000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr15:73858000-73868600	Strong transcription	Osteobl	bone
47	chr15:73858000-73870800	Strong transcription	HUES48 Cell Line	embryonic stem cell
48	chr15:73858000-73884800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr15:73858200-73885800	Strong transcription	Monocytes-CD14+_RO01746	blood
50	chr15:73858400-73865800	Strong transcription	NHLF	lung

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