Variant report

Variant	rs11854138
Chromosome Location	chr15:73864831-73864832
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:73864413..73866453-chr15:73873087..73875155,2	MCF-7	breast:
2	chr15:73864124..73866596-chr15:73874759..73877386,2	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11854267	0.85[YRI][hapmap]
rs11856313	0.82[CEU][hapmap];0.81[GIH][hapmap]
rs13380155	0.82[CEU][hapmap]
rs1481087	0.82[CEU][hapmap];0.81[GIH][hapmap]
rs1585944	0.92[EUR][1000 genomes]
rs16957997	0.82[CEU][hapmap]
rs16958019	0.82[CEU][hapmap]
rs16958041	0.82[CEU][hapmap]
rs16958050	0.82[CEU][hapmap]
rs2306462	0.82[CEU][hapmap]
rs2415153	0.82[CEU][hapmap]
rs3825859	0.82[JPT][hapmap]
rs3826047	0.85[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7166673	0.82[CEU][hapmap];0.81[GIH][hapmap]
rs7178806	0.82[CEU][hapmap]
rs729155	0.82[CEU][hapmap];0.81[GIH][hapmap]
rs8028749	0.82[CEU][hapmap];0.81[GIH][hapmap]
rs8031286	0.87[EUR][1000 genomes]
rs8032265	1.00[CEU][hapmap];1.00[GIH][hapmap];0.84[EUR][1000 genomes]
rs8033242	0.82[CEU][hapmap];0.81[GIH][hapmap]
rs8039395	0.87[EUR][1000 genomes]
rs8039862	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037540	chr15:73712637-73982420	Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv904344	chr15:73800519-73864831	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73844800-73865200	Weak transcription	Stomach Mucosa	stomach
2	chr15:73847400-73866000	Strong transcription	Adipose Nuclei	Adipose
3	chr15:73847400-73893200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr15:73847600-73865000	Strong transcription	Rectal Mucosa Donor 29	rectum
5	chr15:73847600-73865400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr15:73847600-73865800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr15:73847600-73866200	Strong transcription	Liver	Liver
8	chr15:73847600-73882400	Strong transcription	Placenta	Placenta
9	chr15:73848600-73868600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr15:73848600-73868600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr15:73848800-73884800	Strong transcription	Primary T helper cells fromperipheralblood	blood
12	chr15:73848800-73885000	Strong transcription	Primary B cells from cord blood	blood
13	chr15:73850000-73868600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
14	chr15:73850200-73884400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
15	chr15:73850400-73866200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr15:73850400-73870800	Strong transcription	Primary T cells fromperipheralblood	blood
17	chr15:73852200-73874600	Weak transcription	Fetal Heart	heart
18	chr15:73853400-73869000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr15:73853800-73868600	Strong transcription	Primary T cells from cord blood	blood
20	chr15:73855200-73867000	Strong transcription	GM12878-XiMat	blood
21	chr15:73855400-73869200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr15:73855800-73865000	Strong transcription	Spleen	Spleen
23	chr15:73855800-73868200	Weak transcription	Psoas Muscle	Psoas
24	chr15:73855800-73872400	Strong transcription	Fetal Stomach	stomach
25	chr15:73856400-73878000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
26	chr15:73857000-73865600	Strong transcription	Rectal Smooth Muscle	rectum
27	chr15:73857200-73865800	Strong transcription	HMEC	breast
28	chr15:73857200-73868600	Strong transcription	A549	lung
29	chr15:73857400-73866000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr15:73857400-73866200	Strong transcription	Cortex derived primary cultured neurospheres	brain
31	chr15:73857400-73866400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr15:73857400-73868000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr15:73857400-73877200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr15:73857400-73884800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr15:73857600-73865800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr15:73857600-73865800	Strong transcription	Left Ventricle	heart
37	chr15:73857600-73866800	Strong transcription	Brain Hippocampus Middle	brain
38	chr15:73857600-73868400	Weak transcription	Right Atrium	heart
39	chr15:73857600-73878000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
40	chr15:73857600-73885000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr15:73857800-73865800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr15:73857800-73865800	Strong transcription	Esophagus	oesophagus
43	chr15:73857800-73865800	Strong transcription	Stomach Smooth Muscle	stomach
44	chr15:73857800-73865800	Strong transcription	NHEK	skin
45	chr15:73857800-73875600	Strong transcription	Primary monocytes fromperipheralblood	blood
46	chr15:73858000-73865800	Strong transcription	Brain Anterior Caudate	brain
47	chr15:73858000-73867000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr15:73858000-73868600	Strong transcription	Osteobl	bone
49	chr15:73858000-73870800	Strong transcription	HUES48 Cell Line	embryonic stem cell
50	chr15:73858000-73884800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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