Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11854138	1.00[CEU][hapmap];1.00[GIH][hapmap];0.84[EUR][1000 genomes]
rs11856313	0.82[CEU][hapmap];0.81[GIH][hapmap]
rs13380155	0.82[CEU][hapmap]
rs1481087	0.82[CEU][hapmap];0.80[GIH][hapmap]
rs1582742	0.80[ASN][1000 genomes]
rs1585944	0.92[EUR][1000 genomes]
rs16957997	0.82[CEU][hapmap]
rs16958019	0.82[CEU][hapmap]
rs16958041	0.82[CEU][hapmap]
rs16958050	0.82[CEU][hapmap]
rs2306462	0.82[CEU][hapmap]
rs2415150	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2415151	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2415153	0.82[CEU][hapmap]
rs3826047	0.86[EUR][1000 genomes]
rs56227598	0.80[ASN][1000 genomes]
rs7166673	0.82[CEU][hapmap];0.81[GIH][hapmap]
rs7170655	0.84[ASN][1000 genomes]
rs7178806	0.82[CEU][hapmap]
rs729155	0.82[CEU][hapmap];0.81[GIH][hapmap]
rs8028749	0.82[CEU][hapmap];0.81[GIH][hapmap]
rs8031286	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8033242	0.82[CEU][hapmap];0.81[GIH][hapmap];0.80[ASN][1000 genomes]
rs8036438	0.80[ASN][1000 genomes]
rs8039395	0.97[EUR][1000 genomes]
rs8039862	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904343	chr15:73396760-73775043	Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv1037540	chr15:73712637-73982420	Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv1051734	chr15:73717945-73753660	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73729200-73735200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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