Variant report

Variant	rs1481087
Chromosome Location	chr15:73922913-73922914
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:73889781..73891600-chr15:73922314..73924016,2	K562	blood:
2	chr15:73921937..73932817-chr15:73973872..73983627,19	MCF-7	breast:
3	chr15:73899288..73902117-chr15:73920914..73923748,3	MCF-7	breast:
4	chr15:73893372..73895147-chr15:73920840..73923079,2	MCF-7	breast:
5	chr15:73877125..73879241-chr15:73920215..73923156,2	K562	blood:

Variant related genes	Relation type
ENSG00000103855	Chromatin interaction

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10152645	0.88[JPT][hapmap]
rs10162605	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10163172	0.84[EUR][1000 genomes]
rs1044581	0.88[JPT][hapmap]
rs11072433	0.88[JPT][hapmap]
rs11574484	0.88[JPT][hapmap]
rs11574485	0.88[JPT][hapmap]
rs11638472	0.80[EUR][1000 genomes]
rs11854138	0.82[CEU][hapmap];0.81[GIH][hapmap]
rs11854774	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11856313	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.87[TSI][hapmap];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12324832	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12908815	0.84[EUR][1000 genomes]
rs13380155	1.00[CEU][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];0.86[EUR][1000 genomes]
rs13380245	0.82[CEU][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];0.84[EUR][1000 genomes]
rs16957997	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16958019	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16958025	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16958041	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16958050	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2291012	0.88[JPT][hapmap]
rs2291014	0.88[JPT][hapmap]
rs2306462	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2415153	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28834466	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3889590	0.80[EUR][1000 genomes]
rs55636021	0.84[EUR][1000 genomes]
rs55695286	0.84[EUR][1000 genomes]
rs56190024	0.84[EUR][1000 genomes]
rs56227598	0.80[EUR][1000 genomes]
rs57995256	0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60419012	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6495066	0.80[EUR][1000 genomes]
rs7163212	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7163693	0.85[CEU][hapmap];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7164953	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7165447	0.82[CEU][hapmap];0.88[JPT][hapmap];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7166673	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.87[TSI][hapmap];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7169976	0.85[CEU][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];0.84[EUR][1000 genomes]
rs7172448	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7173068	0.80[EUR][1000 genomes]
rs7176174	0.88[JPT][hapmap]
rs7176452	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7176484	0.88[JPT][hapmap]
rs7176701	0.88[JPT][hapmap]
rs7177731	0.85[CEU][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap]
rs7177814	0.88[JPT][hapmap]
rs7178133	0.88[JPT][hapmap]
rs7178806	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.87[TSI][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7182876	0.88[JPT][hapmap]
rs729155	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8027255	0.80[EUR][1000 genomes]
rs8028749	1.00[CEU][hapmap];0.90[CHB][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.87[TSI][hapmap];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8032265	0.82[CEU][hapmap];0.80[GIH][hapmap]
rs8033242	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.92[EUR][1000 genomes]
rs8036438	0.85[CEU][hapmap]
rs8039862	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8040552	0.84[ASN][1000 genomes]
rs899271	0.88[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037540	chr15:73712637-73982420	Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73895000-73924400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:73895200-73924200	Weak transcription	Esophagus	oesophagus
3	chr15:73895800-73923600	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr15:73895800-73924200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr15:73899600-73924200	Weak transcription	Gastric	stomach
6	chr15:73900400-73924000	Weak transcription	Fetal Muscle Leg	muscle
7	chr15:73902800-73924400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr15:73903400-73924000	Weak transcription	Thymus	Thymus
9	chr15:73904800-73924200	Weak transcription	Lung	lung
10	chr15:73910400-73924200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr15:73916800-73923600	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr15:73918000-73923200	Weak transcription	Right Ventricle	heart
13	chr15:73918200-73924000	Enhancers	Primary neutrophils fromperipheralblood	blood
14	chr15:73918200-73924200	Enhancers	Stomach Mucosa	stomach
15	chr15:73918400-73923200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr15:73919400-73924000	Enhancers	Liver	Liver
17	chr15:73919600-73924200	Weak transcription	Pancreas	Pancrea
18	chr15:73920000-73923200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr15:73920200-73923400	Enhancers	Rectal Mucosa Donor 31	rectum
20	chr15:73920200-73923600	Enhancers	Fetal Lung	lung
21	chr15:73920400-73923000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr15:73920400-73923200	Enhancers	Muscle Satellite Cultured Cells	--
23	chr15:73920400-73923200	Enhancers	NHDF-Ad	bronchial
24	chr15:73920400-73924000	Enhancers	Primary T cells from cord blood	blood
25	chr15:73920400-73924200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
26	chr15:73920600-73923000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr15:73920600-73923200	Enhancers	Colon Smooth Muscle	Colon
28	chr15:73920600-73923200	Enhancers	Fetal Kidney	kidney
29	chr15:73920600-73923200	Enhancers	Rectal Mucosa Donor 29	rectum
30	chr15:73920600-73923200	Enhancers	Osteobl	bone
31	chr15:73920600-73923400	Enhancers	Brain Cingulate Gyrus	brain
32	chr15:73920600-73924000	Enhancers	Primary monocytes fromperipheralblood	blood
33	chr15:73920600-73924200	Enhancers	Primary T helper cells fromperipheralblood	blood
34	chr15:73920600-73924200	Enhancers	Primary T killer memory cells from peripheral blood	blood
35	chr15:73920800-73923200	Weak transcription	HSMMtube	muscle
36	chr15:73920800-73923400	Enhancers	Primary T helper cells PMA-I stimulated	--
37	chr15:73920800-73924000	Enhancers	Fetal Brain Male	brain
38	chr15:73921000-73923200	Enhancers	Adipose Nuclei	Adipose
39	chr15:73921000-73924000	Enhancers	Primary T helper naive cells from peripheral blood	blood
40	chr15:73921200-73923000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr15:73921200-73923000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr15:73921200-73923200	Enhancers	ES-I3 Cell Line	embryonic stem cell
43	chr15:73921200-73923200	Enhancers	Primary hematopoietic stem cells short term culture	blood
44	chr15:73921200-73923200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
45	chr15:73921200-73923200	Enhancers	Small Intestine	intestine
46	chr15:73921200-73923200	Enhancers	NH-A	brain
47	chr15:73921200-73923600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr15:73921200-73923600	Enhancers	Sigmoid Colon	Sigmoid Colon
49	chr15:73921200-73923800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
50	chr15:73921200-73924000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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