Variant report

Variant	rs729155
Chromosome Location	chr15:73923773-73923774
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:73889781..73891600-chr15:73922314..73924016,2	K562	blood:
2	chr15:73921937..73932817-chr15:73973872..73983627,19	MCF-7	breast:
3	chr15:73923669..73926089-chr15:78010481..78013463,2	K562	blood:
4	chr15:73923335..73928580-chr15:73974636..73980559,10	MCF-7	breast:

Variant related genes	Relation type
ENSG00000103855	Chromatin interaction
ENSG00000169783	Chromatin interaction

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10152645	0.88[JPT][hapmap]
rs10162605	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10163172	0.84[EUR][1000 genomes]
rs1044581	0.88[JPT][hapmap]
rs11072433	0.88[JPT][hapmap]
rs11574484	0.88[JPT][hapmap]
rs11574485	0.88[JPT][hapmap]
rs11638472	0.80[EUR][1000 genomes]
rs11854138	0.82[CEU][hapmap];0.81[GIH][hapmap]
rs11854774	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11856313	0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.87[TSI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12324832	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12908815	0.84[EUR][1000 genomes]
rs13380155	1.00[CEU][hapmap];0.95[GIH][hapmap];0.82[MEX][hapmap];0.86[EUR][1000 genomes]
rs13380245	0.82[CEU][hapmap];0.95[GIH][hapmap];0.82[MEX][hapmap];0.84[EUR][1000 genomes]
rs1481087	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16957997	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16958019	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.87[TSI][hapmap];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16958025	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16958041	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16958050	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2291012	0.88[JPT][hapmap]
rs2291014	0.88[JPT][hapmap]
rs2306462	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2415153	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28834466	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3889590	0.80[EUR][1000 genomes]
rs55636021	0.84[EUR][1000 genomes]
rs55695286	0.84[EUR][1000 genomes]
rs56190024	0.84[EUR][1000 genomes]
rs56227598	0.80[EUR][1000 genomes]
rs57995256	0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60419012	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6495066	0.80[EUR][1000 genomes]
rs7163212	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7163693	0.85[CEU][hapmap];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7164953	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7165447	0.82[CEU][hapmap];0.88[JPT][hapmap];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7166673	0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.87[TSI][hapmap];0.81[YRI][hapmap];0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7169976	0.85[CEU][hapmap];0.95[GIH][hapmap];0.82[MEX][hapmap];0.84[EUR][1000 genomes]
rs7172448	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7173068	0.80[EUR][1000 genomes]
rs7176174	0.88[JPT][hapmap]
rs7176452	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7176484	0.88[JPT][hapmap]
rs7176701	0.88[JPT][hapmap]
rs7177731	0.85[CEU][hapmap];0.95[GIH][hapmap];0.82[MEX][hapmap]
rs7177814	0.88[JPT][hapmap]
rs7178133	0.88[JPT][hapmap]
rs7178806	0.90[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.87[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7182876	0.88[JPT][hapmap]
rs8027255	0.80[EUR][1000 genomes]
rs8028749	0.91[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.87[TSI][hapmap];0.94[YRI][hapmap];0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8032265	0.82[CEU][hapmap];0.81[GIH][hapmap]
rs8033242	1.00[CEU][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];0.92[EUR][1000 genomes]
rs8036438	0.85[CEU][hapmap]
rs8039862	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8040552	0.84[ASN][1000 genomes]
rs899271	0.88[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037540	chr15:73712637-73982420	Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73895000-73924400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:73895200-73924200	Weak transcription	Esophagus	oesophagus
3	chr15:73895800-73924200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr15:73899600-73924200	Weak transcription	Gastric	stomach
5	chr15:73900400-73924000	Weak transcription	Fetal Muscle Leg	muscle
6	chr15:73902800-73924400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr15:73903400-73924000	Weak transcription	Thymus	Thymus
8	chr15:73904800-73924200	Weak transcription	Lung	lung
9	chr15:73910400-73924200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr15:73918200-73924000	Enhancers	Primary neutrophils fromperipheralblood	blood
11	chr15:73918200-73924200	Enhancers	Stomach Mucosa	stomach
12	chr15:73919400-73924000	Enhancers	Liver	Liver
13	chr15:73919600-73924200	Weak transcription	Pancreas	Pancrea
14	chr15:73920400-73924000	Enhancers	Primary T cells from cord blood	blood
15	chr15:73920400-73924200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
16	chr15:73920600-73924000	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr15:73920600-73924200	Enhancers	Primary T helper cells fromperipheralblood	blood
18	chr15:73920600-73924200	Enhancers	Primary T killer memory cells from peripheral blood	blood
19	chr15:73920800-73924000	Enhancers	Fetal Brain Male	brain
20	chr15:73921000-73924000	Enhancers	Primary T helper naive cells from peripheral blood	blood
21	chr15:73921200-73923800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
22	chr15:73921200-73924000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr15:73921200-73924000	Flanking Active TSS	HepG2	liver
24	chr15:73921200-73924200	Enhancers	Primary hematopoietic stem cells	blood
25	chr15:73921200-73924200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
26	chr15:73921200-73924200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
27	chr15:73921400-73924600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr15:73921600-73924000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr15:73921800-73924000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr15:73921800-73924000	Weak transcription	Fetal Thymus	thymus
31	chr15:73921800-73924200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr15:73921800-73924200	Enhancers	Primary B cells from cord blood	blood
33	chr15:73921800-73924200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
34	chr15:73922200-73924800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
35	chr15:73922400-73923800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr15:73922400-73924200	Enhancers	Colonic Mucosa	Colon
37	chr15:73922400-73924600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
38	chr15:73922400-73924800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr15:73922400-73926000	Active TSS	Stomach Smooth Muscle	stomach
40	chr15:73922600-73924000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr15:73922600-73924000	Enhancers	H9 Cell Line	embryonic stem cell
42	chr15:73922600-73924000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
43	chr15:73922600-73924200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
44	chr15:73922600-73924200	Weak transcription	Spleen	Spleen
45	chr15:73922600-73924800	Flanking Active TSS	Brain Anterior Caudate	brain
46	chr15:73922600-73926000	Active TSS	Breast Myoepithelial Primary Cells	Breast
47	chr15:73922800-73924000	Weak transcription	HSMM	muscle
48	chr15:73922800-73924200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
49	chr15:73922800-73924400	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
50	chr15:73922800-73924800	Flanking Active TSS	Fetal Heart	heart

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