Variant report

Variant	rs11854774
Chromosome Location	chr15:73847775-73847776
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:73840832..73844239-chr15:73845811..73848090,3	K562	blood:

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10152645	0.88[JPT][hapmap]
rs10162605	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10163172	0.86[EUR][1000 genomes]
rs1044581	0.88[JPT][hapmap]
rs11072433	0.88[JPT][hapmap]
rs11574484	0.88[JPT][hapmap]
rs11574485	0.88[JPT][hapmap]
rs11638472	0.82[EUR][1000 genomes]
rs11854138	0.82[CEU][hapmap];0.81[GIH][hapmap]
rs11856313	0.91[ASW][hapmap];1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12324832	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12908815	0.86[EUR][1000 genomes]
rs13380155	1.00[CEU][hapmap];0.95[GIH][hapmap];0.82[MEX][hapmap];0.84[EUR][1000 genomes]
rs13380245	0.82[CEU][hapmap];0.95[GIH][hapmap];0.82[MEX][hapmap];0.86[EUR][1000 genomes]
rs1481087	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.87[TSI][hapmap];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16957919	0.80[EUR][1000 genomes]
rs16957997	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16958019	1.00[CEU][hapmap];0.89[CHB][hapmap];0.85[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16958025	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16958041	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16958050	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2291012	0.88[JPT][hapmap]
rs2291014	0.88[JPT][hapmap]
rs2306462	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2415153	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28834466	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3889590	0.82[EUR][1000 genomes]
rs55636021	0.86[EUR][1000 genomes]
rs55695286	0.86[EUR][1000 genomes]
rs56190024	0.86[EUR][1000 genomes]
rs56227598	0.82[EUR][1000 genomes]
rs57995256	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60419012	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6495066	0.82[EUR][1000 genomes]
rs7163212	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7163693	0.85[CEU][hapmap];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7164953	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7165447	0.82[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7166673	0.91[ASW][hapmap];1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7169976	0.85[CEU][hapmap];0.95[GIH][hapmap];0.82[MEX][hapmap];0.86[EUR][1000 genomes]
rs7172448	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7173068	0.82[EUR][1000 genomes]
rs7176174	0.88[JPT][hapmap]
rs7176452	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7176484	0.88[JPT][hapmap]
rs7176701	0.88[JPT][hapmap]
rs7177731	0.85[CEU][hapmap];0.95[GIH][hapmap];0.82[MEX][hapmap]
rs7177814	0.88[JPT][hapmap]
rs7178133	0.88[JPT][hapmap]
rs7178806	0.90[ASW][hapmap];1.00[CEU][hapmap];0.89[CHB][hapmap];0.85[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7182876	0.88[JPT][hapmap]
rs729155	1.00[ASW][hapmap];1.00[CEU][hapmap];0.89[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];0.87[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8027255	0.82[EUR][1000 genomes]
rs8028749	0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8032265	0.82[CEU][hapmap];0.81[GIH][hapmap]
rs8033242	1.00[CEU][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];0.85[TSI][hapmap];0.94[EUR][1000 genomes]
rs8036438	0.85[CEU][hapmap]
rs8039862	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8040552	0.87[ASN][1000 genomes]
rs899271	0.88[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037540	chr15:73712637-73982420	Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv904344	chr15:73800519-73864831	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73833000-73848000	Weak transcription	HMEC	breast
2	chr15:73835000-73848400	Weak transcription	Brain Hippocampus Middle	brain
3	chr15:73835400-73848800	Weak transcription	Primary B cells from cord blood	blood
4	chr15:73836200-73850600	Weak transcription	HUVEC	blood vessel
5	chr15:73837000-73860000	Weak transcription	Gastric	stomach
6	chr15:73837200-73848400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr15:73838200-73848600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr15:73838200-73850400	Weak transcription	Right Ventricle	heart
9	chr15:73838200-73851000	Weak transcription	Colonic Mucosa	Colon
10	chr15:73843000-73848400	Weak transcription	Primary hematopoietic stem cells	blood
11	chr15:73843000-73848400	Weak transcription	Fetal Heart	heart
12	chr15:73843400-73849200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr15:73843600-73847800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr15:73843600-73848600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr15:73843800-73851200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr15:73844000-73856200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr15:73844200-73863800	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr15:73844600-73848200	Weak transcription	HSMM	muscle
19	chr15:73844800-73850600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr15:73844800-73865200	Weak transcription	Stomach Mucosa	stomach
21	chr15:73845000-73848400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr15:73845200-73847800	Weak transcription	NH-A	brain
23	chr15:73845600-73850400	Weak transcription	Rectal Smooth Muscle	rectum
24	chr15:73846000-73848200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr15:73846000-73848200	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr15:73846000-73848400	Weak transcription	A549	lung
27	chr15:73846000-73850600	Strong transcription	NHDF-Ad	bronchial
28	chr15:73846000-73853400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr15:73846000-73855800	Strong transcription	Monocytes-CD14+_RO01746	blood
30	chr15:73846000-73856200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr15:73846000-73856600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
32	chr15:73846000-73857000	Strong transcription	Stomach Smooth Muscle	stomach
33	chr15:73846200-73847800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr15:73846200-73848200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr15:73846200-73848400	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr15:73846200-73850000	Weak transcription	Brain Cingulate Gyrus	brain
37	chr15:73846200-73850200	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr15:73846200-73850800	Weak transcription	Ovary	ovary
39	chr15:73846200-73851000	Weak transcription	Fetal Brain Male	brain
40	chr15:73846200-73856600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr15:73846200-73863800	Strong transcription	Duodenum Mucosa	Duodenum
42	chr15:73846400-73847800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr15:73846400-73848000	Enhancers	iPS-20b Cell Line	embryonic stem cell
44	chr15:73846400-73848600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr15:73846400-73848800	Weak transcription	Primary T helper cells fromperipheralblood	blood
46	chr15:73846400-73849800	Weak transcription	HepG2	liver
47	chr15:73846400-73850000	Weak transcription	Fetal Kidney	kidney
48	chr15:73846400-73850400	Weak transcription	GM12878-XiMat	blood
49	chr15:73846400-73851200	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr15:73846400-73854800	Weak transcription	Psoas Muscle	Psoas

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