Variant report

Variant	rs7176701
Chromosome Location	chr15:73989821-73989822
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	REST	chr15:73989323-73989865	PFSK-1	brain:	n/a	n/a
2	NFIC	chr15:73989246-73989908	SK-N-SH	brain:	n/a	chr15:73989490-73989507
3	ZNF143	chr15:73989392-73989834	GM12878	blood:	n/a	n/a
4	MXI1	chr15:73989223-73990040	IMR90	lung:	n/a	n/a
5	FOSL2	chr15:73989209-73989895	SK-N-SH	brain:	n/a	chr15:73989537-73989547 chr15:73989720-73989729
6	FOXP2	chr15:73989230-73989843	PFSK-1	brain:	n/a	n/a
7	MAFK	chr15:73989356-73989843	HepG2	liver:	n/a	chr15:73989532-73989552 chr15:73989539-73989548 chr15:73989535-73989549 chr15:73989531-73989546 chr15:73989536-73989545 chr15:73989534-73989550 chr15:73989538-73989548
8	TCF12	chr15:73989364-73989831	GM12878	blood:	n/a	chr15:73989766-73989774
9	POLR2A	chr15:73989160-73989850	HUVEC	blood vessel:	n/a	n/a
10	POLR2A	chr15:73989042-73989865	PFSK-1	brain:	n/a	n/a
11	TEAD4	chr15:73989274-73989924	SK-N-SH	brain:	n/a	n/a
12	POLR2A	chr15:73989345-73989884	HL-60	blood:	n/a	n/a
13	MAX	chr15:73989410-73989848	H1-hESC	embryonic stem cell:	n/a	chr15:73989715-73989725 chr15:73989645-73989655
14	POLR2A	chr15:73989017-73989834	PFSK-1	brain:	n/a	n/a
15	SIN3AK20	chr15:73989285-73989821	SK-N-SH	brain:	n/a	n/a
16	POLR2A	chr15:73989245-73989933	HUVEC	blood vessel:	n/a	n/a
17	PBX3	chr15:73989185-73989907	SK-N-SH	brain:	n/a	n/a
18	MAX	chr15:73989398-73989854	NB4	blood:	n/a	chr15:73989715-73989725 chr15:73989645-73989655
19	TCF12	chr15:73989110-73989928	SK-N-SH	brain:	n/a	chr15:73989766-73989774
20	EP300	chr15:73989154-73989945	SK-N-SH	brain:	n/a	n/a
21	MAX	chr15:73989182-73989881	SK-N-SH	brain:	n/a	chr15:73989715-73989725 chr15:73989645-73989655
22	GATA3	chr15:73989205-73989903	SK-N-SH	brain:	n/a	chr15:73989654-73989662
23	GABPA	chr15:73989347-73989931	HL-60	blood:	n/a	n/a
24	MTA3	chr15:73989278-73989880	GM12878	blood:	n/a	n/a
25	MAFK	chr15:73989107-73989930	IMR90	lung:	n/a	chr15:73989532-73989552 chr15:73989539-73989548 chr15:73989535-73989549 chr15:73989531-73989546 chr15:73989536-73989545 chr15:73989534-73989550 chr15:73989538-73989548
26	GATA3	chr15:73989224-73989977	SK-N-SH	brain:	n/a	chr15:73989654-73989662
27	RUNX3	chr15:73989235-73989862	GM12878	blood:	n/a	n/a
28	MAX	chr15:73989263-73989860	SK-N-SH	brain:	n/a	chr15:73989715-73989725 chr15:73989645-73989655
29	SIN3AK20	chr15:73989288-73989926	PFSK-1	brain:	n/a	n/a
30	GABPA	chr15:73989377-73989844	MCF-7	breast:	n/a	n/a
31	MAFK	chr15:73988977-73989968	GM12878	blood:	n/a	chr15:73989532-73989552 chr15:73989539-73989548 chr15:73989535-73989549 chr15:73989531-73989546 chr15:73989536-73989545 chr15:73989534-73989550 chr15:73989538-73989548
32	RUNX3	chr15:73989241-73989833	GM12878	blood:	n/a	n/a
33	MXI1	chr15:73989449-73989842	GM12878	blood:	n/a	n/a
34	MXI1	chr15:73989158-73989978	SK-N-SH	brain:	n/a	n/a
35	GABPA	chr15:73989294-73989907	SK-N-SH	brain:	n/a	n/a
36	PBX3	chr15:73989201-73989943	SK-N-SH	brain:	n/a	n/a
37	FOXM1	chr15:73989255-73989870	GM12878	blood:	n/a	n/a
38	MAX	chr15:73989456-73989823	K562	blood:	n/a	chr15:73989715-73989725 chr15:73989645-73989655
39	NFIC	chr15:73989146-73989902	SK-N-SH	brain:	n/a	chr15:73989490-73989507
40	IKZF1	chr15:73989244-73989824	GM12878	blood:	n/a	n/a
41	MAFK	chr15:73989304-73989903	H1-hESC	embryonic stem cell:	n/a	chr15:73989532-73989552 chr15:73989539-73989548 chr15:73989535-73989549 chr15:73989531-73989546 chr15:73989536-73989545 chr15:73989534-73989550 chr15:73989538-73989548
42	SRF	chr15:73989286-73989893	MCF-7	breast:	n/a	n/a
43	TEAD4	chr15:73989257-73989904	SK-N-SH	brain:	n/a	n/a
44	SRF	chr15:73989316-73989824	ECC-1	luminal epithelium:	n/a	n/a
45	MAZ	chr15:73988792-73989977	IMR90	lung:	n/a	chr15:73989715-73989725
46	EP300	chr15:73989339-73989855	SK-N-SH_RA	brain:	n/a	n/a
47	EP300	chr15:73989448-73989826	GM12878	blood:	n/a	n/a
48	GABPA	chr15:73989360-73989836	SK-N-SH	brain:	n/a	n/a
49	RXRA	chr15:73989310-73989915	SK-N-SH	brain:	n/a	n/a
50	POLR2A	chr15:73989262-73989829	SK-N-MC	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:73975048..73981150-chr15:73987719..73994346,13	MCF-7	breast:
2	chr15:73925828..73927770-chr15:73988437..73990338,2	MCF-7	breast:

Variant related genes	Relation type
CD276	TF binding region
ENSG00000103855	Chromatin interaction
ENSG00000156642	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10083681	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10152645	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10152662	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1044581	1.00[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.91[MEX][hapmap];0.92[MKK][hapmap];0.85[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11072433	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11552770	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11574479	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11574480	0.83[AFR][1000 genomes]
rs11574483	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11574484	1.00[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.91[MEX][hapmap];0.92[MKK][hapmap];0.85[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11574485	1.00[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.91[MEX][hapmap];0.92[MKK][hapmap];0.85[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11574490	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11633159	0.91[MEX][hapmap];0.81[EUR][1000 genomes]
rs11636441	0.82[AFR][1000 genomes]
rs11856313	0.88[JPT][hapmap]
rs1481087	0.88[JPT][hapmap]
rs16957997	0.88[JPT][hapmap]
rs16958019	0.88[JPT][hapmap]
rs16958041	0.88[JPT][hapmap]
rs16958050	0.88[JPT][hapmap]
rs2291012	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2291014	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2306462	0.88[JPT][hapmap]
rs2415153	0.88[JPT][hapmap]
rs28506051	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28640136	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55984094	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7161756	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7166673	0.88[JPT][hapmap]
rs7173448	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7173476	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7176174	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7176484	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7177088	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7177814	1.00[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.91[MEX][hapmap];0.92[MKK][hapmap];0.89[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7178133	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7178806	0.88[JPT][hapmap]
rs7182876	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs729155	0.88[JPT][hapmap]
rs74026250	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8028749	0.88[JPT][hapmap]
rs8038012	0.95[ASN][1000 genomes]
rs8039862	0.88[JPT][hapmap]
rs899271	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs966378	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73978800-74000800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr15:73979400-73996400	Weak transcription	A549	lung
3	chr15:73981800-73995000	Weak transcription	Pancreas	Pancrea
4	chr15:73982600-73990000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr15:73984600-73992000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr15:73984600-73995400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr15:73985400-73990600	Enhancers	Left Ventricle	heart
8	chr15:73985400-73993600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr15:73986000-73990200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr15:73986000-73990400	Enhancers	NHDF-Ad	bronchial
11	chr15:73986200-73990600	Enhancers	Adipose Nuclei	Adipose
12	chr15:73986400-73990200	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr15:73986400-73990600	Enhancers	Fetal Lung	lung
14	chr15:73986600-73990400	Enhancers	HMEC	breast
15	chr15:73986800-73990000	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr15:73986800-73990000	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr15:73986800-73990200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr15:73986800-73990400	Enhancers	NHLF	lung
19	chr15:73986800-73992200	Weak transcription	HepG2	liver
20	chr15:73987000-73990800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr15:73987800-73990200	Enhancers	Fetal Muscle Leg	muscle
22	chr15:73988000-73990000	Enhancers	Right Atrium	heart
23	chr15:73988000-73990000	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
24	chr15:73988000-73990200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr15:73988000-73990400	Enhancers	Spleen	Spleen
26	chr15:73988000-73990800	Enhancers	Primary hematopoietic stem cells	blood
27	chr15:73988200-73990000	Enhancers	Fetal Stomach	stomach
28	chr15:73988200-73990000	Enhancers	Osteobl	bone
29	chr15:73988200-73990200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr15:73988200-73990200	Enhancers	Fetal Muscle Trunk	muscle
31	chr15:73988200-73990400	Enhancers	HSMM	muscle
32	chr15:73988200-73990600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr15:73988200-73990600	Enhancers	HUVEC	blood vessel
34	chr15:73988200-73991800	Enhancers	HSMMtube	muscle
35	chr15:73988400-73990200	Enhancers	Breast Myoepithelial Primary Cells	Breast
36	chr15:73988400-73990200	Enhancers	Placenta	Placenta
37	chr15:73988400-73990400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr15:73988400-73990400	Enhancers	Brain Cingulate Gyrus	brain
39	chr15:73988400-73990400	Enhancers	Colon Smooth Muscle	Colon
40	chr15:73988600-73990000	Enhancers	Primary monocytes fromperipheralblood	blood
41	chr15:73988600-73990000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
42	chr15:73988600-73990200	Enhancers	Stomach Mucosa	stomach
43	chr15:73988600-73990400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr15:73988600-73990600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
45	chr15:73988600-73992400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
46	chr15:73988800-73990000	Enhancers	Fetal Brain Male	brain
47	chr15:73988800-73990400	Enhancers	Primary T helper naive cells from peripheral blood	blood
48	chr15:73988800-73990600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
49	chr15:73988800-73990800	Enhancers	GM12878-XiMat	blood
50	chr15:73988800-73996200	Weak transcription	H9 Cell Line	embryonic stem cell

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