Variant report

Variant	rs28640136
Chromosome Location	chr15:73993497-73993498
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF263	chr15:73992022-73993690	HEK293-T-REx	kidney:	n/a	chr15:73993226-73993235 chr15:73992532-73992541

No.	Distal block	Cell Line	Cell type
1	chr15:73992648..73995502-chr15:73997951..74000936,2	MCF-7	breast:
2	chr15:73969155..73970086-chr15:73992341..73993677,5	MCF-7	breast:
3	chr15:73928462..73929402-chr15:73992230..73993688,9	MCF-7	breast:
4	chr15:73975048..73981150-chr15:73987719..73994346,13	MCF-7	breast:
5	chr15:73926269..73929041-chr15:73991360..73994156,2	MCF-7	breast:

Variant related genes	Relation type
CD276	TF binding region
ENSG00000156642	Chromatin interaction
ENSG00000103855	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10083681	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10152645	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10152662	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1044581	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11072433	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11552770	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11574479	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11574480	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11574483	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11574484	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11574485	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11574490	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11636441	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2291012	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2291014	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28506051	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55984094	0.84[AMR][1000 genomes]
rs7161756	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7173448	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7173476	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7176174	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7176484	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7176701	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7177088	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7177814	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7178133	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7182876	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs74026250	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8038012	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs899271	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs966378	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73978800-74000800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr15:73979400-73996400	Weak transcription	A549	lung
3	chr15:73981800-73995000	Weak transcription	Pancreas	Pancrea
4	chr15:73984600-73995400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr15:73985400-73993600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr15:73988800-73996200	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr15:73989400-73994200	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr15:73989600-73994200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr15:73989600-73994800	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr15:73989600-73996200	Weak transcription	Duodenum Mucosa	Duodenum
11	chr15:73989600-73996800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr15:73989800-73994600	Weak transcription	Gastric	stomach
13	chr15:73989800-73994800	Weak transcription	Colonic Mucosa	Colon
14	chr15:73989800-73995000	Weak transcription	Lung	lung
15	chr15:73989800-73995400	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr15:73989800-73995800	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr15:73989800-73996400	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr15:73989800-73996800	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr15:73989800-73997000	Weak transcription	Hela-S3	cervix
20	chr15:73989800-74000600	Weak transcription	Esophagus	oesophagus
21	chr15:73989800-74001600	Strong transcription	Fetal Intestine Small	intestine
22	chr15:73989800-74008800	Weak transcription	Small Intestine	intestine
23	chr15:73990000-73996200	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr15:73990000-73997600	Weak transcription	Fetal Kidney	kidney
25	chr15:73990000-73999800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr15:73990000-74012000	Weak transcription	Fetal Brain Male	brain
27	chr15:73990200-74007200	Weak transcription	Stomach Mucosa	stomach
28	chr15:73990200-74007600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr15:73990400-73993600	Weak transcription	Stomach Smooth Muscle	stomach
30	chr15:73990400-73993800	Weak transcription	Ovary	ovary
31	chr15:73990400-73993800	Weak transcription	NH-A	brain
32	chr15:73990400-73994200	Weak transcription	Aorta	Aorta
33	chr15:73990400-73994800	Weak transcription	Spleen	Spleen
34	chr15:73990400-74007200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr15:73990400-74007600	Strong transcription	Fetal Stomach	stomach
36	chr15:73990600-73994600	Weak transcription	Adipose Nuclei	Adipose
37	chr15:73990600-73996800	Weak transcription	Fetal Lung	lung
38	chr15:73990600-73999400	Weak transcription	Left Ventricle	heart
39	chr15:73990600-74006600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
40	chr15:73990600-74007400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr15:73990600-74018800	Weak transcription	Right Atrium	heart
42	chr15:73990800-73993600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr15:73990800-73996200	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr15:73990800-73996400	Weak transcription	Rectal Smooth Muscle	rectum
45	chr15:73990800-73996400	Weak transcription	Skeletal Muscle Female	skeletal muscle
46	chr15:73990800-73997400	Weak transcription	Brain Substantia Nigra	brain
47	chr15:73990800-73997600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr15:73990800-74009200	Weak transcription	Psoas Muscle	Psoas
49	chr15:73991000-74003400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
50	chr15:73991200-74001600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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