Variant report

Variant	rs7173476
Chromosome Location	chr15:73994847-73994848
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:27)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:27 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr15:73994752-73995062	H1-hESC	embryonic stem cell:	n/a	n/a
2	CTCF	chr15:73994840-73994990	GM12872	blood:	n/a	n/a
3	CTCF	chr15:73994813-73994986	MCF-7	breast:	n/a	n/a
4	CTCF	chr15:73994781-73994941	A549	lung:	n/a	n/a
5	CTCF	chr15:73994840-73994990	HMEC	breast:	n/a	n/a
6	CTCF	chr15:73994792-73995016	MCF-7	breast:	n/a	n/a
7	CTCF	chr15:73994739-73995043	H1-hESC	embryonic stem cell:	n/a	n/a
8	CTCF	chr15:73994756-73995139	K562	blood:	n/a	n/a
9	CTCF	chr15:73994839-73994979	Gliobla	brain:	n/a	n/a
10	RAD21	chr15:73994780-73994939	H1-hESC	embryonic stem cell:	n/a	n/a
11	CTCF	chr15:73994784-73995023	MCF-7	breast:	n/a	n/a
12	POLR2A	chr15:73994703-73994964	H1-hESC	embryonic stem cell:	n/a	n/a
13	CTCF	chr15:73994824-73994997	MCF-7	breast:	n/a	n/a
14	CTCF	chr15:73994804-73994979	NHEK	skin:	n/a	n/a
15	CTCF	chr15:73994756-73995044	K562	blood:	n/a	n/a
16	MYC	chr15:73994785-73995053	MCF-7	breast:	n/a	n/a
17	CTCF	chr15:73994820-73994970	BJ	skin:	n/a	n/a
18	CTCF	chr15:73994840-73994990	Hela-S3	cervix:	n/a	n/a
19	CTCF	chr15:73994840-73994990	HUVEC	blood vessel:	n/a	n/a
20	POLR2A	chr15:73994838-73994895	K562	blood:	n/a	n/a
21	CTCF	chr15:73994837-73994994	A549	lung:	n/a	n/a
22	CTCF	chr15:73994816-73994991	MCF-7	breast:	n/a	n/a
23	CTCF	chr15:73994757-73995015	K562	blood:	n/a	n/a
24	CTCF	chr15:73994829-73994986	Fibrobl	skin:	n/a	n/a
25	CTCF	chr15:73994808-73994997	GM12891	blood:	n/a	n/a
26	CTCF	chr15:73994840-73994990	HCPEpiC	choroid plexus:	n/a	n/a
27	POLR2A	chr15:73994839-73995388	H1-hESC	embryonic stem cell:	n/a	n/a

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:73975489..73977527-chr15:73994222..73997098,2	MCF-7	breast:
2	chr15:73992648..73995502-chr15:73997951..74000936,2	MCF-7	breast:
3	chr15:73993873..73996840-chr15:74002371..74004783,2	MCF-7	breast:
4	chr15:73975584..73976331-chr15:73994335..73995109,2	MCF-7	breast:

No data

Variant related genes	Relation type
CD276	TF binding region
ENSG00000103855	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10083681	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10152645	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10152662	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1044581	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11072433	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11552770	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11574479	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11574480	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11574483	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11574484	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11574485	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11574490	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11636441	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2291012	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2291014	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28506051	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28640136	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7161756	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7173448	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7176174	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7176484	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7176701	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7177088	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7177814	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7178133	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7182876	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs74026250	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8038012	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs899271	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs966378	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73978800-74000800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr15:73979400-73996400	Weak transcription	A549	lung
3	chr15:73981800-73995000	Weak transcription	Pancreas	Pancrea
4	chr15:73984600-73995400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr15:73988800-73996200	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr15:73989600-73996200	Weak transcription	Duodenum Mucosa	Duodenum
7	chr15:73989600-73996800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr15:73989800-73995000	Weak transcription	Lung	lung
9	chr15:73989800-73995400	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr15:73989800-73995800	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr15:73989800-73996400	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr15:73989800-73996800	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr15:73989800-73997000	Weak transcription	Hela-S3	cervix
14	chr15:73989800-74000600	Weak transcription	Esophagus	oesophagus
15	chr15:73989800-74001600	Strong transcription	Fetal Intestine Small	intestine
16	chr15:73989800-74008800	Weak transcription	Small Intestine	intestine
17	chr15:73990000-73996200	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr15:73990000-73997600	Weak transcription	Fetal Kidney	kidney
19	chr15:73990000-73999800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr15:73990000-74012000	Weak transcription	Fetal Brain Male	brain
21	chr15:73990200-74007200	Weak transcription	Stomach Mucosa	stomach
22	chr15:73990200-74007600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr15:73990400-74007200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr15:73990400-74007600	Strong transcription	Fetal Stomach	stomach
25	chr15:73990600-73996800	Weak transcription	Fetal Lung	lung
26	chr15:73990600-73999400	Weak transcription	Left Ventricle	heart
27	chr15:73990600-74006600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
28	chr15:73990600-74007400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr15:73990600-74018800	Weak transcription	Right Atrium	heart
30	chr15:73990800-73996200	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr15:73990800-73996400	Weak transcription	Rectal Smooth Muscle	rectum
32	chr15:73990800-73996400	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr15:73990800-73997400	Weak transcription	Brain Substantia Nigra	brain
34	chr15:73990800-73997600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr15:73990800-74009200	Weak transcription	Psoas Muscle	Psoas
36	chr15:73991000-74003400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
37	chr15:73991200-74001600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr15:73991400-74004800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr15:73991400-74007200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr15:73991800-73997000	Weak transcription	HSMMtube	muscle
41	chr15:73992000-73997000	Weak transcription	HSMM	muscle
42	chr15:73992200-74007400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr15:73992400-73995600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr15:73992600-73995400	Weak transcription	Colon Smooth Muscle	Colon
45	chr15:73992600-73995600	Weak transcription	Right Ventricle	heart
46	chr15:73992600-73996800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr15:73992600-73997000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr15:73992600-74000600	Weak transcription	Brain Angular Gyrus	brain
49	chr15:73992600-74002400	Weak transcription	Fetal Heart	heart
50	chr15:73992600-74007400	Strong transcription	Fetal Muscle Trunk	muscle

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