Variant report

Variant	rs966378
Chromosome Location	chr15:74003533-74003534
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:73993873..73996840-chr15:74002371..74004783,2	MCF-7	breast:
2	chr15:73996066..73998855-chr15:74002172..74005149,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000103855	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10083681	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10152645	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10152662	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1044581	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11072433	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11552770	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11574479	0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11574480	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11574483	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11574484	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11574485	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11574490	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11636441	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2291012	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2291014	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28506051	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28640136	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7161756	0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7173448	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7173476	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7176174	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7176484	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7176701	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7177088	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7177814	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7178133	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7182876	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs74026250	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8038012	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs899271	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73989800-74008800	Weak transcription	Small Intestine	intestine
2	chr15:73990000-74012000	Weak transcription	Fetal Brain Male	brain
3	chr15:73990200-74007200	Weak transcription	Stomach Mucosa	stomach
4	chr15:73990200-74007600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr15:73990400-74007200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr15:73990400-74007600	Strong transcription	Fetal Stomach	stomach
7	chr15:73990600-74006600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
8	chr15:73990600-74007400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr15:73990600-74018800	Weak transcription	Right Atrium	heart
10	chr15:73990800-74009200	Weak transcription	Psoas Muscle	Psoas
11	chr15:73991400-74004800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr15:73991400-74007200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr15:73992200-74007400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr15:73992600-74007400	Strong transcription	Fetal Muscle Trunk	muscle
15	chr15:73993000-74007400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr15:73993200-74007000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr15:73993400-74006400	Strong transcription	Liver	Liver
18	chr15:73993400-74007800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr15:73993600-74006800	Strong transcription	NHEK	skin
20	chr15:73993600-74007400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr15:73993600-74007400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr15:73993600-74007600	Strong transcription	Fetal Brain Female	brain
23	chr15:73993600-74008000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr15:73993800-74007400	Strong transcription	Cortex derived primary cultured neurospheres	brain
25	chr15:73994000-74006600	Strong transcription	Muscle Satellite Cultured Cells	--
26	chr15:73994000-74007200	Strong transcription	Brain Germinal Matrix	brain
27	chr15:73994200-74006600	Strong transcription	HUES64 Cell Line	embryonic stem cell
28	chr15:73994200-74006600	Strong transcription	Aorta	Aorta
29	chr15:73994200-74007200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr15:73994400-74006400	Strong transcription	NHLF	lung
31	chr15:73994400-74007400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr15:73994600-74007400	Strong transcription	Adipose Nuclei	Adipose
33	chr15:73994800-74007200	Strong transcription	Placenta Amnion	Placenta Amnion
34	chr15:73995200-74007200	Strong transcription	Placenta	Placenta
35	chr15:73995400-74006600	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr15:73996200-74003800	Strong transcription	H9 Cell Line	embryonic stem cell
37	chr15:73996200-74006600	Strong transcription	HUES6 Cell Line	embryonic stem cell
38	chr15:73996200-74006800	Strong transcription	Skeletal Muscle Male	skeletal muscle
39	chr15:73996400-74004200	Strong transcription	Brain Anterior Caudate	brain
40	chr15:73996400-74004200	Strong transcription	Skeletal Muscle Female	skeletal muscle
41	chr15:73996400-74006200	Strong transcription	Rectal Smooth Muscle	rectum
42	chr15:73996400-74006400	Strong transcription	H1 Cell Line	embryonic stem cell
43	chr15:73996600-74003800	Strong transcription	HepG2	liver
44	chr15:73996600-74004000	Strong transcription	Brain Cingulate Gyrus	brain
45	chr15:73996600-74004200	Strong transcription	NHDF-Ad	bronchial
46	chr15:73996600-74006400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
47	chr15:73996800-74004000	Strong transcription	Fetal Lung	lung
48	chr15:73996800-74004200	Strong transcription	Osteobl	bone
49	chr15:73996800-74007200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
50	chr15:73997000-74004200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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