Variant report

Variant	rs11574480
Chromosome Location	chr15:73995431-73995432
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:73975489..73977527-chr15:73994222..73997098,2	MCF-7	breast:
2	chr15:73992648..73995502-chr15:73997951..74000936,2	MCF-7	breast:
3	chr15:73993873..73996840-chr15:74002371..74004783,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000103855	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10083681	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10152645	0.90[YRI][hapmap];0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10152662	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1044581	0.89[YRI][hapmap];0.88[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs11072433	0.81[EUR][1000 genomes]
rs11552770	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11574479	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11574483	0.81[EUR][1000 genomes]
rs11574484	0.89[YRI][hapmap];0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11574485	0.89[YRI][hapmap];0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11574490	0.81[EUR][1000 genomes]
rs11633159	0.88[CEU][hapmap];0.92[CHB][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11636441	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13380155	0.82[CHB][hapmap]
rs13380245	0.82[CHB][hapmap]
rs2291012	0.87[YRI][hapmap];0.87[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs2291014	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs28506051	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs28640136	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs55984094	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7161756	0.88[AFR][1000 genomes]
rs7173448	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7173476	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7176174	0.83[AFR][1000 genomes]
rs7176484	0.83[AFR][1000 genomes]
rs7176701	0.83[AFR][1000 genomes]
rs7177814	0.86[YRI][hapmap];0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7178133	0.81[EUR][1000 genomes]
rs7182876	0.83[AFR][1000 genomes]
rs899271	0.84[YRI][hapmap];0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs966378	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448312	chr15:73995047-73996564	Strong transcription Weak transcription Enhancers Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73978800-74000800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr15:73979400-73996400	Weak transcription	A549	lung
3	chr15:73988800-73996200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr15:73989600-73996200	Weak transcription	Duodenum Mucosa	Duodenum
5	chr15:73989600-73996800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr15:73989800-73995800	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr15:73989800-73996400	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr15:73989800-73996800	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr15:73989800-73997000	Weak transcription	Hela-S3	cervix
10	chr15:73989800-74000600	Weak transcription	Esophagus	oesophagus
11	chr15:73989800-74001600	Strong transcription	Fetal Intestine Small	intestine
12	chr15:73989800-74008800	Weak transcription	Small Intestine	intestine
13	chr15:73990000-73996200	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr15:73990000-73997600	Weak transcription	Fetal Kidney	kidney
15	chr15:73990000-73999800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr15:73990000-74012000	Weak transcription	Fetal Brain Male	brain
17	chr15:73990200-74007200	Weak transcription	Stomach Mucosa	stomach
18	chr15:73990200-74007600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr15:73990400-74007200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr15:73990400-74007600	Strong transcription	Fetal Stomach	stomach
21	chr15:73990600-73996800	Weak transcription	Fetal Lung	lung
22	chr15:73990600-73999400	Weak transcription	Left Ventricle	heart
23	chr15:73990600-74006600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
24	chr15:73990600-74007400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr15:73990600-74018800	Weak transcription	Right Atrium	heart
26	chr15:73990800-73996200	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr15:73990800-73996400	Weak transcription	Rectal Smooth Muscle	rectum
28	chr15:73990800-73996400	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr15:73990800-73997400	Weak transcription	Brain Substantia Nigra	brain
30	chr15:73990800-73997600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr15:73990800-74009200	Weak transcription	Psoas Muscle	Psoas
32	chr15:73991000-74003400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
33	chr15:73991200-74001600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr15:73991400-74004800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr15:73991400-74007200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr15:73991800-73997000	Weak transcription	HSMMtube	muscle
37	chr15:73992000-73997000	Weak transcription	HSMM	muscle
38	chr15:73992200-74007400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr15:73992400-73995600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr15:73992600-73995600	Weak transcription	Right Ventricle	heart
41	chr15:73992600-73996800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr15:73992600-73997000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr15:73992600-74000600	Weak transcription	Brain Angular Gyrus	brain
44	chr15:73992600-74002400	Weak transcription	Fetal Heart	heart
45	chr15:73992600-74007400	Strong transcription	Fetal Muscle Trunk	muscle
46	chr15:73992800-73996400	Weak transcription	Brain Anterior Caudate	brain
47	chr15:73992800-73996600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
48	chr15:73992800-73996600	Weak transcription	HepG2	liver
49	chr15:73992800-73997000	Weak transcription	HUES48 Cell Line	embryonic stem cell
50	chr15:73992800-73997000	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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