Variant report

Variant	rs899271
Chromosome Location	chr15:73994189-73994190
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:73992648..73995502-chr15:73997951..74000936,2	MCF-7	breast:
2	chr15:73993873..73996840-chr15:74002371..74004783,2	MCF-7	breast:
3	chr15:73975048..73981150-chr15:73987719..73994346,13	MCF-7	breast:

Variant related genes	Relation type
ENSG00000103855	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10083681	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10152645	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10152662	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1044581	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11072433	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11552770	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11574479	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11574480	0.84[YRI][hapmap];0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11574483	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11574484	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11574485	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11574490	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11636441	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11856313	0.88[JPT][hapmap]
rs1481087	0.88[JPT][hapmap]
rs16957997	0.89[JPT][hapmap]
rs16958019	0.88[JPT][hapmap]
rs16958041	0.89[JPT][hapmap]
rs16958050	0.89[JPT][hapmap]
rs2291012	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2291014	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2306462	0.88[JPT][hapmap]
rs2415153	0.89[JPT][hapmap]
rs28506051	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28640136	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3825859	0.85[CEU][hapmap]
rs7161756	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7166673	0.88[JPT][hapmap]
rs7173448	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7173476	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7176174	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7176484	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7176701	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7177088	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7177814	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7178133	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7178806	0.88[JPT][hapmap]
rs7182876	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs729155	0.88[JPT][hapmap]
rs74026250	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8028749	0.88[JPT][hapmap]
rs8038012	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8039862	0.89[JPT][hapmap]
rs966378	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73978800-74000800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr15:73979400-73996400	Weak transcription	A549	lung
3	chr15:73981800-73995000	Weak transcription	Pancreas	Pancrea
4	chr15:73984600-73995400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr15:73988800-73996200	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr15:73989400-73994200	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr15:73989600-73994200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr15:73989600-73994800	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr15:73989600-73996200	Weak transcription	Duodenum Mucosa	Duodenum
10	chr15:73989600-73996800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr15:73989800-73994600	Weak transcription	Gastric	stomach
12	chr15:73989800-73994800	Weak transcription	Colonic Mucosa	Colon
13	chr15:73989800-73995000	Weak transcription	Lung	lung
14	chr15:73989800-73995400	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr15:73989800-73995800	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr15:73989800-73996400	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr15:73989800-73996800	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr15:73989800-73997000	Weak transcription	Hela-S3	cervix
19	chr15:73989800-74000600	Weak transcription	Esophagus	oesophagus
20	chr15:73989800-74001600	Strong transcription	Fetal Intestine Small	intestine
21	chr15:73989800-74008800	Weak transcription	Small Intestine	intestine
22	chr15:73990000-73996200	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr15:73990000-73997600	Weak transcription	Fetal Kidney	kidney
24	chr15:73990000-73999800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr15:73990000-74012000	Weak transcription	Fetal Brain Male	brain
26	chr15:73990200-74007200	Weak transcription	Stomach Mucosa	stomach
27	chr15:73990200-74007600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr15:73990400-73994200	Weak transcription	Aorta	Aorta
29	chr15:73990400-73994800	Weak transcription	Spleen	Spleen
30	chr15:73990400-74007200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr15:73990400-74007600	Strong transcription	Fetal Stomach	stomach
32	chr15:73990600-73994600	Weak transcription	Adipose Nuclei	Adipose
33	chr15:73990600-73996800	Weak transcription	Fetal Lung	lung
34	chr15:73990600-73999400	Weak transcription	Left Ventricle	heart
35	chr15:73990600-74006600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
36	chr15:73990600-74007400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr15:73990600-74018800	Weak transcription	Right Atrium	heart
38	chr15:73990800-73996200	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr15:73990800-73996400	Weak transcription	Rectal Smooth Muscle	rectum
40	chr15:73990800-73996400	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr15:73990800-73997400	Weak transcription	Brain Substantia Nigra	brain
42	chr15:73990800-73997600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr15:73990800-74009200	Weak transcription	Psoas Muscle	Psoas
44	chr15:73991000-74003400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
45	chr15:73991200-74001600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr15:73991400-74004800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr15:73991400-74007200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr15:73991800-73997000	Weak transcription	HSMMtube	muscle
49	chr15:73992000-73997000	Weak transcription	HSMM	muscle
50	chr15:73992200-73994400	Weak transcription	NHLF	lung

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