Variant report

Variant	rs2306462
Chromosome Location	chr15:73907656-73907657
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:73905787..73908717-chr15:73914619..73916779,2	MCF-7	breast:
2	chr15:73890210..73895158-chr15:73907012..73911430,4	MCF-7	breast:
3	chr15:73907248..73910394-chr15:73923600..73926433,4	MCF-7	breast:
4	chr15:73903235..73905876-chr15:73906751..73908895,2	K562	blood:
5	chr15:73907163..73909580-chr15:73921080..73922650,2	K562	blood:

Variant related genes	Relation type
ENSG00000156642	Chromatin interaction

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10152645	0.88[JPT][hapmap]
rs10162605	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10163172	0.86[EUR][1000 genomes]
rs1044581	0.88[JPT][hapmap]
rs11072433	0.88[JPT][hapmap]
rs11574484	0.88[JPT][hapmap]
rs11574485	0.88[JPT][hapmap]
rs11638472	0.82[EUR][1000 genomes]
rs11854138	0.82[CEU][hapmap]
rs11854774	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11856313	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12324832	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12908815	0.86[EUR][1000 genomes]
rs13380155	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs13380245	0.82[CEU][hapmap];0.86[EUR][1000 genomes]
rs1481087	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16957919	0.80[EUR][1000 genomes]
rs16957997	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16958019	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16958025	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16958041	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16958050	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2291012	0.88[JPT][hapmap]
rs2291014	0.88[JPT][hapmap]
rs2415153	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28834466	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3889590	0.82[EUR][1000 genomes]
rs55636021	0.86[EUR][1000 genomes]
rs55695286	0.86[EUR][1000 genomes]
rs56190024	0.86[EUR][1000 genomes]
rs56227598	0.82[EUR][1000 genomes]
rs57995256	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60419012	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6495066	0.82[EUR][1000 genomes]
rs7163212	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7163693	0.87[CEU][hapmap];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7164953	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7165447	0.85[CEU][hapmap];0.88[JPT][hapmap];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7166673	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7169976	0.85[CEU][hapmap];0.86[EUR][1000 genomes]
rs7172448	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7173068	0.82[EUR][1000 genomes]
rs7176174	0.88[JPT][hapmap]
rs7176452	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7176484	0.88[JPT][hapmap]
rs7176701	0.88[JPT][hapmap]
rs7177731	0.85[CEU][hapmap]
rs7177814	0.88[JPT][hapmap]
rs7178133	0.88[JPT][hapmap]
rs7178806	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7182876	0.88[JPT][hapmap]
rs729155	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8027255	0.82[EUR][1000 genomes]
rs8028749	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8032265	0.82[CEU][hapmap]
rs8033242	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs8036438	0.87[CEU][hapmap]
rs8039862	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8040552	0.84[ASN][1000 genomes]
rs899271	0.88[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037540	chr15:73712637-73982420	Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73895000-73910000	Weak transcription	Hela-S3	cervix
2	chr15:73895000-73924400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr15:73895200-73921400	Weak transcription	Fetal Thymus	thymus
4	chr15:73895200-73924200	Weak transcription	Esophagus	oesophagus
5	chr15:73895400-73922400	Weak transcription	Colonic Mucosa	Colon
6	chr15:73895600-73910000	Weak transcription	HMEC	breast
7	chr15:73895800-73909800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr15:73895800-73910200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr15:73895800-73912200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr15:73895800-73912600	Weak transcription	Brain Substantia Nigra	brain
11	chr15:73895800-73913600	Weak transcription	A549	lung
12	chr15:73895800-73923600	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr15:73895800-73924200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr15:73896200-73912400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr15:73896200-73912600	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr15:73896400-73910000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr15:73896400-73912200	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr15:73896400-73920400	Weak transcription	Primary T cells from cord blood	blood
19	chr15:73897000-73910200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr15:73897400-73911800	Weak transcription	Fetal Intestine Large	intestine
21	chr15:73898000-73910000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr15:73899600-73908800	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr15:73899600-73924200	Weak transcription	Gastric	stomach
24	chr15:73899800-73909200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr15:73900400-73909800	Weak transcription	Aorta	Aorta
26	chr15:73900400-73921800	Weak transcription	Primary B cells from cord blood	blood
27	chr15:73900400-73924000	Weak transcription	Fetal Muscle Leg	muscle
28	chr15:73900600-73907800	Weak transcription	Brain Anterior Caudate	brain
29	chr15:73900600-73908200	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr15:73900800-73912800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr15:73901000-73910200	Weak transcription	Fetal Lung	lung
32	chr15:73901200-73913000	Weak transcription	Brain Angular Gyrus	brain
33	chr15:73901200-73915200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr15:73901400-73909800	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr15:73901400-73916400	Weak transcription	Fetal Kidney	kidney
36	chr15:73901400-73916800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr15:73901400-73920600	Weak transcription	Primary monocytes fromperipheralblood	blood
38	chr15:73901600-73907800	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr15:73901600-73909000	Weak transcription	Primary T helper cells PMA-I stimulated	--
40	chr15:73901600-73919800	Weak transcription	Adipose Nuclei	Adipose
41	chr15:73901800-73908000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr15:73901800-73910800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr15:73901800-73912200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr15:73901800-73916600	Weak transcription	Right Ventricle	heart
45	chr15:73901800-73922400	Weak transcription	Right Atrium	heart
46	chr15:73902000-73910400	Weak transcription	Psoas Muscle	Psoas
47	chr15:73902000-73911800	Weak transcription	Fetal Intestine Small	intestine
48	chr15:73902000-73912200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr15:73902000-73912200	Weak transcription	Small Intestine	intestine
50	chr15:73902000-73920600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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