Variant report

Variant	rs7176484
Chromosome Location	chr15:73990228-73990229
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:73975048..73981150-chr15:73987719..73994346,13	MCF-7	breast:
2	chr15:73925828..73927770-chr15:73988437..73990338,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000103855	Chromatin interaction
ENSG00000156642	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10083681	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10152645	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10152662	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1044581	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11072433	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11552770	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11574479	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11574480	0.83[AFR][1000 genomes]
rs11574483	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11574484	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11574485	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11574490	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11633159	0.81[EUR][1000 genomes]
rs11636441	0.82[AFR][1000 genomes]
rs11856313	0.88[JPT][hapmap]
rs1481087	0.88[JPT][hapmap]
rs16957997	0.89[JPT][hapmap]
rs16958019	0.88[JPT][hapmap]
rs16958041	0.89[JPT][hapmap]
rs16958050	0.89[JPT][hapmap]
rs2291012	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2291014	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2306462	0.88[JPT][hapmap]
rs2415153	0.89[JPT][hapmap]
rs28506051	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28640136	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55984094	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7161756	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7166673	0.88[JPT][hapmap]
rs7173448	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7173476	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7176174	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7176701	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7177088	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7177814	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7178133	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7178806	0.88[JPT][hapmap]
rs7182876	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs729155	0.88[JPT][hapmap]
rs74026250	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8028749	0.88[JPT][hapmap]
rs8038012	0.95[ASN][1000 genomes]
rs8039862	0.89[JPT][hapmap]
rs899271	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs966378	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73978800-74000800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr15:73979400-73996400	Weak transcription	A549	lung
3	chr15:73981800-73995000	Weak transcription	Pancreas	Pancrea
4	chr15:73984600-73992000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr15:73984600-73995400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr15:73985400-73990600	Enhancers	Left Ventricle	heart
7	chr15:73985400-73993600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr15:73986000-73990400	Enhancers	NHDF-Ad	bronchial
9	chr15:73986200-73990600	Enhancers	Adipose Nuclei	Adipose
10	chr15:73986400-73990600	Enhancers	Fetal Lung	lung
11	chr15:73986600-73990400	Enhancers	HMEC	breast
12	chr15:73986800-73990400	Enhancers	NHLF	lung
13	chr15:73986800-73992200	Weak transcription	HepG2	liver
14	chr15:73987000-73990800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr15:73988000-73990400	Enhancers	Spleen	Spleen
16	chr15:73988000-73990800	Enhancers	Primary hematopoietic stem cells	blood
17	chr15:73988200-73990400	Enhancers	HSMM	muscle
18	chr15:73988200-73990600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr15:73988200-73990600	Enhancers	HUVEC	blood vessel
20	chr15:73988200-73991800	Enhancers	HSMMtube	muscle
21	chr15:73988400-73990400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr15:73988400-73990400	Enhancers	Brain Cingulate Gyrus	brain
23	chr15:73988400-73990400	Enhancers	Colon Smooth Muscle	Colon
24	chr15:73988600-73990400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr15:73988600-73990600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
26	chr15:73988600-73992400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr15:73988800-73990400	Enhancers	Primary T helper naive cells from peripheral blood	blood
28	chr15:73988800-73990600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
29	chr15:73988800-73990800	Enhancers	GM12878-XiMat	blood
30	chr15:73988800-73996200	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr15:73989000-73990400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
32	chr15:73989000-73990400	Enhancers	Primary T killer memory cells from peripheral blood	blood
33	chr15:73989000-73990400	Enhancers	Ovary	ovary
34	chr15:73989000-73990600	Enhancers	Fetal Thymus	thymus
35	chr15:73989000-73990800	Enhancers	Brain Substantia Nigra	brain
36	chr15:73989000-73990800	Enhancers	Dnd41	blood
37	chr15:73989000-73991000	Enhancers	Brain Hippocampus Middle	brain
38	chr15:73989200-73990400	Enhancers	Aorta	Aorta
39	chr15:73989400-73990400	Weak transcription	Fetal Brain Female	brain
40	chr15:73989400-73990600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
41	chr15:73989400-73990600	Enhancers	Brain Germinal Matrix	brain
42	chr15:73989400-73990800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr15:73989400-73991800	Weak transcription	Brain Anterior Caudate	brain
44	chr15:73989400-73991800	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr15:73989400-73994200	Weak transcription	HUES64 Cell Line	embryonic stem cell
46	chr15:73989600-73990400	Enhancers	Primary T cells from cord blood	blood
47	chr15:73989600-73990400	Enhancers	Muscle Satellite Cultured Cells	--
48	chr15:73989600-73990400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr15:73989600-73990400	Weak transcription	Rectal Smooth Muscle	rectum
50	chr15:73989600-73990400	Enhancers	NH-A	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links