Variant report

Variant	rs55984094
Chromosome Location	chr15:73978096-73978097
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:73923335..73928580-chr15:73974636..73980559,10	MCF-7	breast:
2	chr15:73923214..73925755-chr15:73977792..73979713,2	K562	blood:
3	chr15:73921937..73932817-chr15:73973872..73983627,19	MCF-7	breast:
4	chr15:73975048..73981150-chr15:73987719..73994346,13	MCF-7	breast:
5	chr15:73976691..73979215-chr15:74216849..74218653,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000156642	Chromatin interaction
ENSG00000103855	Chromatin interaction
ENSG00000261801	Chromatin interaction
ENSG00000129038	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11574479	0.86[AMR][1000 genomes]
rs11574480	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11633159	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11636441	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28640136	0.84[AMR][1000 genomes]
rs7176174	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7176484	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7176701	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7177088	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7182876	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs74026250	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037540	chr15:73712637-73982420	Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	esv3434440	chr15:73975149-73978997	Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS Weak transcription Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv3341618	chr15:73975424-73978272	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73975800-73978200	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr15:73975800-73978200	Active TSS	HUES64 Cell Line	embryonic stem cell
3	chr15:73976000-73978200	Active TSS	H9 Cell Line	embryonic stem cell
4	chr15:73976000-73978200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr15:73976000-73978400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
6	chr15:73976000-73978600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr15:73976200-73978200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr15:73976200-73978200	Active TSS	Aorta	Aorta
9	chr15:73976400-73978200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr15:73976400-73978200	Active TSS	NHDF-Ad	bronchial
11	chr15:73976400-73978400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr15:73976400-73978400	Active TSS	Left Ventricle	heart
13	chr15:73976600-73978200	Active TSS	Fetal Muscle Trunk	muscle
14	chr15:73976600-73978200	Active TSS	NHLF	lung
15	chr15:73977000-73978400	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
16	chr15:73977000-73979000	Flanking Active TSS	Adipose Nuclei	Adipose
17	chr15:73977200-73978400	Flanking Active TSS	HUVEC	blood vessel
18	chr15:73977200-73978600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
19	chr15:73977200-73979000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
20	chr15:73977400-73978200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr15:73977400-73978200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr15:73977400-73978800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr15:73977600-73978400	Weak transcription	Esophagus	oesophagus
24	chr15:73977600-73978400	Flanking Active TSS	Fetal Lung	lung
25	chr15:73977600-73978800	Flanking Active TSS	Fetal Brain Male	brain
26	chr15:73977600-73978800	Enhancers	Stomach Mucosa	stomach
27	chr15:73977600-73979600	Flanking Active TSS	Hela-S3	cervix
28	chr15:73977800-73978400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr15:73977800-73978400	Active TSS	Colonic Mucosa	Colon
30	chr15:73977800-73978400	Flanking Active TSS	Fetal Heart	heart
31	chr15:73977800-73978600	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
32	chr15:73977800-73978600	Flanking Active TSS	Colon Smooth Muscle	Colon
33	chr15:73977800-73978600	Flanking Active TSS	Fetal Kidney	kidney
34	chr15:73977800-73978800	Enhancers	Primary hematopoietic stem cells short term culture	blood
35	chr15:73977800-73978800	Enhancers	Duodenum Mucosa	Duodenum
36	chr15:73977800-73979000	Enhancers	Brain Substantia Nigra	brain
37	chr15:73977800-73979000	Flanking Active TSS	HepG2	liver
38	chr15:73977800-73979600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr15:73977800-73979600	Enhancers	Rectal Mucosa Donor 31	rectum
40	chr15:73977800-73979800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr15:73977800-73979800	Enhancers	Pancreas	Pancrea
42	chr15:73977800-73981800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr15:73977800-73982400	Enhancers	Lung	lung
44	chr15:73978000-73978200	Flanking Active TSS	ES-WA7 Cell Line	embryonic stem cell
45	chr15:73978000-73978200	Flanking Active TSS	Liver	Liver
46	chr15:73978000-73978200	Flanking Active TSS	Brain Anterior Caudate	brain
47	chr15:73978000-73978200	Flanking Bivalent TSS/Enh	Brain Inferior Temporal Lobe	brain
48	chr15:73978000-73978200	Flanking Active TSS	Fetal Intestine Large	intestine
49	chr15:73978000-73978200	Flanking Active TSS	Fetal Intestine Small	intestine
50	chr15:73978000-73978200	Flanking Active TSS	Fetal Stomach	stomach

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