Variant report

Variant	rs11633159
Chromosome Location	chr15:73971247-73971248
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1044581	0.81[MEX][hapmap]
rs11072433	0.81[MEX][hapmap]
rs11574480	0.88[CEU][hapmap];0.92[CHB][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11574484	0.81[MEX][hapmap]
rs11574485	0.81[MEX][hapmap]
rs11636441	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13380155	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs13380245	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs55984094	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7169976	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs7176174	0.81[EUR][1000 genomes]
rs7176484	0.81[EUR][1000 genomes]
rs7176701	0.91[MEX][hapmap];0.81[EUR][1000 genomes]
rs7177088	0.81[EUR][1000 genomes]
rs7177814	0.81[MEX][hapmap]
rs7178133	0.81[MEX][hapmap]
rs7182876	0.81[EUR][1000 genomes]
rs74026250	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037540	chr15:73712637-73982420	Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11633159	HIGD2B	cis	cerebellum	SCAN
rs11633159	STRA6	cis	parietal	SCAN

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73969800-73974000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr15:73970000-73971400	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr15:73970000-73973600	Weak transcription	Spleen	Spleen
4	chr15:73970000-73976000	Weak transcription	Pancreas	Pancrea
5	chr15:73970000-73976000	Weak transcription	Right Atrium	heart
6	chr15:73970200-73971800	Weak transcription	Adipose Nuclei	Adipose
7	chr15:73970200-73974800	Weak transcription	Fetal Muscle Trunk	muscle
8	chr15:73970200-73974800	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr15:73970800-73971400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr15:73971000-73972800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr15:73971000-73974800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr15:73971200-73971800	Enhancers	H9 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links