Variant report

Variant	rs13380155
Chromosome Location	chr15:73921996-73921997
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:73912420..73913927-chr15:73920373..73922798,2	K562	blood:
2	chr15:73907163..73909580-chr15:73921080..73922650,2	K562	blood:
3	chr15:73921937..73932817-chr15:73973872..73983627,19	MCF-7	breast:
4	chr15:73899288..73902117-chr15:73920914..73923748,3	MCF-7	breast:
5	chr15:73893372..73895147-chr15:73920840..73923079,2	MCF-7	breast:
6	chr15:73910340..73912093-chr15:73919702..73922481,2	K562	blood:
7	chr15:73877125..73879241-chr15:73920215..73923156,2	K562	blood:

Variant related genes	Relation type
ENSG00000103855	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10162605	0.95[EUR][1000 genomes]
rs10163172	0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11574480	0.82[CHB][hapmap]
rs11633159	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs11638472	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11854138	0.82[CEU][hapmap]
rs11854774	0.84[EUR][1000 genomes]
rs11856313	1.00[CEU][hapmap];0.95[GIH][hapmap];0.82[MEX][hapmap];0.84[EUR][1000 genomes]
rs12324832	0.84[EUR][1000 genomes]
rs12908815	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13380245	0.85[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1481087	1.00[CEU][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];0.86[EUR][1000 genomes]
rs1582742	0.90[EUR][1000 genomes]
rs16957919	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16957997	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs16958019	1.00[CEU][hapmap];0.89[GIH][hapmap];1.00[MEX][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs16958025	0.84[EUR][1000 genomes]
rs16958041	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs16958050	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2306462	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs2415153	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs28834466	0.84[EUR][1000 genomes]
rs3889590	0.91[EUR][1000 genomes]
rs55636021	0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55695286	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56190024	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56227598	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs57995256	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs60419012	0.84[EUR][1000 genomes]
rs6495066	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7163212	0.84[EUR][1000 genomes]
rs7163693	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7164953	0.84[EUR][1000 genomes]
rs7165447	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7166673	1.00[CEU][hapmap];0.95[GIH][hapmap];0.82[MEX][hapmap];0.84[EUR][1000 genomes]
rs7169976	1.00[CEU][hapmap];0.92[CHB][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7172130	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7172448	0.81[EUR][1000 genomes]
rs7173068	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7176452	0.83[EUR][1000 genomes]
rs7177731	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.90[EUR][1000 genomes]
rs7178806	1.00[CEU][hapmap];0.89[GIH][hapmap];0.82[MEX][hapmap];0.84[EUR][1000 genomes]
rs729155	1.00[CEU][hapmap];0.95[GIH][hapmap];0.82[MEX][hapmap];0.86[EUR][1000 genomes]
rs8027255	0.95[EUR][1000 genomes]
rs8028749	1.00[CEU][hapmap];0.95[GIH][hapmap];0.82[MEX][hapmap];0.84[EUR][1000 genomes]
rs8032265	0.82[CEU][hapmap]
rs8033242	1.00[CEU][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap]
rs8036438	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs8039862	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs8040552	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037540	chr15:73712637-73982420	Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73895000-73924400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:73895200-73924200	Weak transcription	Esophagus	oesophagus
3	chr15:73895400-73922400	Weak transcription	Colonic Mucosa	Colon
4	chr15:73895800-73923600	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr15:73895800-73924200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr15:73899600-73924200	Weak transcription	Gastric	stomach
7	chr15:73900400-73924000	Weak transcription	Fetal Muscle Leg	muscle
8	chr15:73901800-73922400	Weak transcription	Right Atrium	heart
9	chr15:73902800-73924400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr15:73903400-73924000	Weak transcription	Thymus	Thymus
11	chr15:73904800-73924200	Weak transcription	Lung	lung
12	chr15:73910200-73922400	Weak transcription	Aorta	Aorta
13	chr15:73910400-73922200	Weak transcription	HSMM	muscle
14	chr15:73910400-73924200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr15:73912800-73922600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr15:73912800-73922600	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr15:73916000-73922800	Enhancers	Duodenum Smooth Muscle	Duodenum
18	chr15:73916000-73922800	Enhancers	Fetal Heart	heart
19	chr15:73916800-73923600	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr15:73917200-73922600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr15:73918000-73922600	Weak transcription	Ovary	ovary
22	chr15:73918000-73923200	Weak transcription	Right Ventricle	heart
23	chr15:73918200-73922800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr15:73918200-73924000	Enhancers	Primary neutrophils fromperipheralblood	blood
25	chr15:73918200-73924200	Enhancers	Stomach Mucosa	stomach
26	chr15:73918400-73923200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr15:73919000-73922800	Weak transcription	Brain Substantia Nigra	brain
28	chr15:73919400-73922200	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr15:73919400-73922400	Enhancers	Fetal Intestine Large	intestine
30	chr15:73919400-73924000	Enhancers	Liver	Liver
31	chr15:73919600-73922600	Enhancers	HUES48 Cell Line	embryonic stem cell
32	chr15:73919600-73924200	Weak transcription	Pancreas	Pancrea
33	chr15:73920000-73922000	Enhancers	HUES6 Cell Line	embryonic stem cell
34	chr15:73920000-73923200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
35	chr15:73920200-73923400	Enhancers	Rectal Mucosa Donor 31	rectum
36	chr15:73920200-73923600	Enhancers	Fetal Lung	lung
37	chr15:73920400-73922400	Enhancers	HUES64 Cell Line	embryonic stem cell
38	chr15:73920400-73922400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr15:73920400-73922600	Enhancers	iPS-15b Cell Line	embryonic stem cell
40	chr15:73920400-73923000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr15:73920400-73923200	Enhancers	Muscle Satellite Cultured Cells	--
42	chr15:73920400-73923200	Enhancers	NHDF-Ad	bronchial
43	chr15:73920400-73924000	Enhancers	Primary T cells from cord blood	blood
44	chr15:73920400-73924200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
45	chr15:73920600-73922200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr15:73920600-73922400	Enhancers	NHLF	lung
47	chr15:73920600-73922800	Enhancers	Fetal Intestine Small	intestine
48	chr15:73920600-73923000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr15:73920600-73923200	Enhancers	Colon Smooth Muscle	Colon
50	chr15:73920600-73923200	Enhancers	Fetal Kidney	kidney

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links