Variant report

Variant	rs7173068
Chromosome Location	chr15:73829572-73829573
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10162605	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10163172	0.86[AFR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11633159	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs11638472	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11854774	0.82[EUR][1000 genomes]
rs11856313	0.85[CEU][hapmap];0.95[GIH][hapmap];0.82[MEX][hapmap];0.82[EUR][1000 genomes]
rs12324832	0.82[EUR][1000 genomes]
rs12908815	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13380155	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13380245	1.00[CEU][hapmap];0.92[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1481087	0.85[CEU][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];0.80[EUR][1000 genomes]
rs1582742	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16957919	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16957997	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs16958019	0.85[CEU][hapmap];0.91[GIH][hapmap];1.00[MEX][hapmap];0.82[EUR][1000 genomes]
rs16958025	0.82[EUR][1000 genomes]
rs16958041	0.85[CEU][hapmap];0.80[EUR][1000 genomes]
rs16958050	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs2306462	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs2415153	0.85[CEU][hapmap];0.82[CHB][hapmap];0.82[EUR][1000 genomes]
rs28834466	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3889590	0.96[EUR][1000 genomes]
rs55636021	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55695286	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56190024	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56227598	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs57995256	0.82[EUR][1000 genomes]
rs60419012	0.82[EUR][1000 genomes]
rs6495066	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7163212	0.82[EUR][1000 genomes]
rs7163693	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7164953	0.82[EUR][1000 genomes]
rs7165447	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7166673	0.85[CEU][hapmap];0.95[GIH][hapmap];0.82[MEX][hapmap];0.82[EUR][1000 genomes]
rs7169976	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7172130	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7172448	0.85[EUR][1000 genomes]
rs7176452	0.80[EUR][1000 genomes]
rs7177731	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7178806	0.85[CEU][hapmap];0.90[GIH][hapmap];0.82[MEX][hapmap];0.82[EUR][1000 genomes]
rs729155	0.85[CEU][hapmap];0.95[GIH][hapmap];0.82[MEX][hapmap];0.80[EUR][1000 genomes]
rs8027255	1.00[EUR][1000 genomes]
rs8028749	0.85[CEU][hapmap];0.95[GIH][hapmap];0.82[MEX][hapmap];0.82[EUR][1000 genomes]
rs8033242	0.85[CEU][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];0.84[EUR][1000 genomes]
rs8036438	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs8039862	0.85[CEU][hapmap];0.80[EUR][1000 genomes]
rs8040552	0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037540	chr15:73712637-73982420	Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv525433	chr15:73766072-73833600	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv904344	chr15:73800519-73864831	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73808200-73847400	Weak transcription	Left Ventricle	heart
2	chr15:73820800-73847600	Weak transcription	Aorta	Aorta
3	chr15:73821200-73846000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr15:73826800-73847600	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr15:73827800-73847600	Weak transcription	Colon Smooth Muscle	Colon

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