Variant report

Variant	rs57995256
Chromosome Location	chr15:73797925-73797926
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:73777860..73779711-chr15:73796678..73798817,2	K562	blood:
2	chr15:73793807..73796662-chr15:73797098..73799823,2	MCF-7	breast:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10162605	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10163172	0.86[EUR][1000 genomes]
rs11638472	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11854774	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11856313	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12324832	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12908815	0.86[EUR][1000 genomes]
rs13380155	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13380245	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1481087	0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16957919	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs16957997	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16958019	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16958025	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16958041	0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16958050	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2306462	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2415153	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28834466	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3889590	0.82[EUR][1000 genomes]
rs55636021	0.86[EUR][1000 genomes]
rs55695286	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56190024	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56227598	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs60419012	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6495066	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7163212	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7163693	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7164953	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7165447	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7166673	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7169976	0.86[EUR][1000 genomes]
rs7172448	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7173068	0.82[EUR][1000 genomes]
rs7176452	0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7178806	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs729155	0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8027255	0.82[EUR][1000 genomes]
rs8028749	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8033242	0.94[EUR][1000 genomes]
rs8039862	0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8040552	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037540	chr15:73712637-73982420	Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv525433	chr15:73766072-73833600	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73796600-73798400	Enhancers	K562	blood

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