Variant report

Variant	rs55636021
Chromosome Location	chr15:73812262-73812263
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10162605	0.96[EUR][1000 genomes]
rs10163172	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11638472	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11854774	0.86[EUR][1000 genomes]
rs11856313	0.86[EUR][1000 genomes]
rs12324832	0.86[EUR][1000 genomes]
rs12908815	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13380155	0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13380245	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1481087	0.84[EUR][1000 genomes]
rs1582742	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16957919	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16957997	0.86[EUR][1000 genomes]
rs16958019	0.86[EUR][1000 genomes]
rs16958025	0.86[EUR][1000 genomes]
rs16958041	0.84[EUR][1000 genomes]
rs16958050	0.86[EUR][1000 genomes]
rs2306462	0.86[EUR][1000 genomes]
rs2415153	0.86[EUR][1000 genomes]
rs28834466	0.86[EUR][1000 genomes]
rs3889590	0.93[EUR][1000 genomes]
rs55695286	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56190024	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56227598	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs57995256	0.86[EUR][1000 genomes]
rs60419012	0.86[EUR][1000 genomes]
rs6495066	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7163212	0.86[EUR][1000 genomes]
rs7163693	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7164953	0.86[EUR][1000 genomes]
rs7165447	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7166673	0.86[EUR][1000 genomes]
rs7169976	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7172130	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7172448	0.82[EUR][1000 genomes]
rs7173068	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7176074	0.81[AFR][1000 genomes]
rs7176452	0.84[EUR][1000 genomes]
rs7177731	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7178806	0.86[EUR][1000 genomes]
rs729155	0.84[EUR][1000 genomes]
rs8027255	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs8028749	0.86[EUR][1000 genomes]
rs8033242	0.81[EUR][1000 genomes]
rs8036438	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8039862	0.84[EUR][1000 genomes]
rs8040552	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037540	chr15:73712637-73982420	Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv525433	chr15:73766072-73833600	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv904344	chr15:73800519-73864831	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73808200-73847400	Weak transcription	Left Ventricle	heart
2	chr15:73809800-73812400	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr15:73811400-73812400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
4	chr15:73811400-73813400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr15:73811600-73819400	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr15:73812200-73813200	Weak transcription	Fetal Heart	heart

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