Variant report

Variant	rs7176074
Chromosome Location	chr15:73833600-73833601
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10163172	0.83[AFR][1000 genomes]
rs11854138	0.94[GIH][hapmap]
rs13380155	0.82[MEX][hapmap]
rs13380245	0.81[GIH][hapmap];0.82[MEX][hapmap]
rs1481087	0.82[MEX][hapmap]
rs16958019	0.82[MEX][hapmap]
rs55636021	0.81[AFR][1000 genomes]
rs7169976	0.81[GIH][hapmap];0.82[MEX][hapmap]
rs7177731	0.81[GIH][hapmap];0.82[MEX][hapmap]
rs8032265	0.94[GIH][hapmap]
rs8033242	0.82[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037540	chr15:73712637-73982420	Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv525433	chr15:73766072-73833600	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv904344	chr15:73800519-73864831	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73808200-73847400	Weak transcription	Left Ventricle	heart
2	chr15:73820800-73847600	Weak transcription	Aorta	Aorta
3	chr15:73821200-73846000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr15:73826800-73847600	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr15:73827800-73847600	Weak transcription	Colon Smooth Muscle	Colon
6	chr15:73832200-73834000	Enhancers	Stomach Mucosa	stomach
7	chr15:73832600-73847600	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr15:73832800-73846200	Weak transcription	Duodenum Mucosa	Duodenum
9	chr15:73833000-73833600	Enhancers	A549	lung
10	chr15:73833000-73833800	Weak transcription	Fetal Intestine Large	intestine
11	chr15:73833000-73833800	Weak transcription	HepG2	liver
12	chr15:73833000-73847600	Weak transcription	Liver	Liver
13	chr15:73833000-73848000	Weak transcription	HMEC	breast
14	chr15:73833200-73847400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr15:73833400-73834600	Enhancers	Fetal Intestine Small	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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