Variant report

Variant	rs8033242
Chromosome Location	chr15:73732556-73732557
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10162605	0.84[EUR][1000 genomes]
rs10163172	0.81[EUR][1000 genomes]
rs11638472	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11854138	0.82[CEU][hapmap];0.81[GIH][hapmap]
rs11854774	0.94[EUR][1000 genomes]
rs11856313	1.00[CEU][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];0.85[TSI][hapmap];0.94[EUR][1000 genomes]
rs12324832	0.94[EUR][1000 genomes]
rs12908815	0.81[EUR][1000 genomes]
rs13380155	1.00[CEU][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap]
rs13380245	0.82[CEU][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];0.81[EUR][1000 genomes]
rs1481087	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.92[EUR][1000 genomes]
rs1582742	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16957919	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16957997	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs16958019	1.00[CEU][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.94[EUR][1000 genomes]
rs16958025	0.94[EUR][1000 genomes]
rs16958041	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs16958050	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs2306462	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs2415153	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs28834466	0.94[EUR][1000 genomes]
rs3889590	0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55636021	0.81[EUR][1000 genomes]
rs55695286	0.81[EUR][1000 genomes]
rs56190024	0.81[EUR][1000 genomes]
rs56227598	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57995256	0.94[EUR][1000 genomes]
rs60419012	0.94[EUR][1000 genomes]
rs6495066	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7163212	0.94[EUR][1000 genomes]
rs7163693	0.85[CEU][hapmap];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7164953	0.94[EUR][1000 genomes]
rs7165447	0.82[CEU][hapmap];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7166673	1.00[CEU][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];0.85[TSI][hapmap];0.94[EUR][1000 genomes]
rs7169976	0.85[CEU][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];0.81[EUR][1000 genomes]
rs7172448	0.98[EUR][1000 genomes]
rs7173068	0.84[EUR][1000 genomes]
rs7176452	0.92[EUR][1000 genomes]
rs7177731	0.94[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7178806	1.00[CEU][hapmap];0.95[GIH][hapmap];0.82[MEX][hapmap];0.85[TSI][hapmap];0.94[EUR][1000 genomes]
rs729155	1.00[CEU][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];0.92[EUR][1000 genomes]
rs8027255	0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8028749	1.00[CEU][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];0.85[TSI][hapmap];0.94[EUR][1000 genomes]
rs8031286	0.80[ASN][1000 genomes]
rs8032265	0.82[CEU][hapmap];0.81[GIH][hapmap];0.80[ASN][1000 genomes]
rs8036438	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8039862	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs8040552	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904343	chr15:73396760-73775043	Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv1037540	chr15:73712637-73982420	Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv1051734	chr15:73717945-73753660	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73729200-73735200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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