Variant report

Variant	rs60419012
Chromosome Location	chr15:73917287-73917288
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:73892805..73894766-chr15:73916843..73918631,2	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10162605	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10163172	0.86[EUR][1000 genomes]
rs11638472	0.82[EUR][1000 genomes]
rs11854774	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11856313	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12324832	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12908815	0.86[EUR][1000 genomes]
rs13380155	0.84[EUR][1000 genomes]
rs13380245	0.86[EUR][1000 genomes]
rs1481087	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16957919	0.80[EUR][1000 genomes]
rs16957997	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16958019	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16958025	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16958041	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16958050	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2306462	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2415153	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28834466	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3889590	0.82[EUR][1000 genomes]
rs55636021	0.86[EUR][1000 genomes]
rs55695286	0.86[EUR][1000 genomes]
rs56190024	0.86[EUR][1000 genomes]
rs56227598	0.82[EUR][1000 genomes]
rs57995256	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6495066	0.82[EUR][1000 genomes]
rs7163212	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7163693	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7164953	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7165447	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7166673	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7169976	0.86[EUR][1000 genomes]
rs7172448	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7173068	0.82[EUR][1000 genomes]
rs7176452	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7178806	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs729155	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8027255	0.82[EUR][1000 genomes]
rs8028749	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8033242	0.94[EUR][1000 genomes]
rs8039862	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8040552	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037540	chr15:73712637-73982420	Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73895000-73924400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:73895200-73921400	Weak transcription	Fetal Thymus	thymus
3	chr15:73895200-73924200	Weak transcription	Esophagus	oesophagus
4	chr15:73895400-73922400	Weak transcription	Colonic Mucosa	Colon
5	chr15:73895800-73923600	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr15:73895800-73924200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr15:73896400-73920400	Weak transcription	Primary T cells from cord blood	blood
8	chr15:73899600-73924200	Weak transcription	Gastric	stomach
9	chr15:73900400-73921800	Weak transcription	Primary B cells from cord blood	blood
10	chr15:73900400-73924000	Weak transcription	Fetal Muscle Leg	muscle
11	chr15:73901400-73920600	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr15:73901600-73919800	Weak transcription	Adipose Nuclei	Adipose
13	chr15:73901800-73922400	Weak transcription	Right Atrium	heart
14	chr15:73902000-73920600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr15:73902800-73924400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr15:73903400-73924000	Weak transcription	Thymus	Thymus
17	chr15:73904800-73919200	Weak transcription	Pancreas	Pancrea
18	chr15:73904800-73921400	Weak transcription	K562	blood
19	chr15:73904800-73924200	Weak transcription	Lung	lung
20	chr15:73909000-73917800	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr15:73909600-73919600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr15:73910200-73918600	Weak transcription	Hela-S3	cervix
23	chr15:73910200-73922400	Weak transcription	Aorta	Aorta
24	chr15:73910400-73921200	Weak transcription	NH-A	brain
25	chr15:73910400-73922200	Weak transcription	HSMM	muscle
26	chr15:73910400-73924200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr15:73910600-73920600	Weak transcription	Osteobl	bone
28	chr15:73910600-73921200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr15:73911000-73921600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr15:73911400-73920800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr15:73912200-73917600	Enhancers	HUES64 Cell Line	embryonic stem cell
32	chr15:73912400-73919600	Enhancers	Colon Smooth Muscle	Colon
33	chr15:73912600-73917400	Enhancers	iPS-20b Cell Line	embryonic stem cell
34	chr15:73912800-73918800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr15:73912800-73920600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr15:73912800-73921200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr15:73912800-73922600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr15:73912800-73922600	Weak transcription	H9 Cell Line	embryonic stem cell
39	chr15:73913000-73917800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr15:73913200-73918200	Weak transcription	Primary neutrophils fromperipheralblood	blood
41	chr15:73913400-73920000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr15:73913600-73919400	Weak transcription	Fetal Intestine Large	intestine
43	chr15:73914400-73918400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr15:73914400-73919400	Weak transcription	Liver	Liver
45	chr15:73914400-73920400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
46	chr15:73914600-73918200	Weak transcription	GM12878-XiMat	blood
47	chr15:73914600-73920400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
48	chr15:73914800-73918200	Weak transcription	A549	lung
49	chr15:73915600-73917400	Enhancers	Brain Hippocampus Middle	brain
50	chr15:73915600-73921400	Enhancers	NHEK	skin

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