Variant report

Variant	rs16958025
Chromosome Location	chr15:73876222-73876223
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:73864124..73866596-chr15:73874759..73877386,2	MCF-7	breast:
2	chr15:73872462..73876250-chr15:73883404..73887216,4	MCF-7	breast:
3	chr15:73875024..73876650-chr15:73877953..73880121,2	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10162605	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10163172	0.86[EUR][1000 genomes]
rs11638472	0.82[EUR][1000 genomes]
rs11854774	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11856313	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12324832	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12908815	0.86[EUR][1000 genomes]
rs13380155	0.84[EUR][1000 genomes]
rs13380245	0.86[EUR][1000 genomes]
rs1481087	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16957919	0.80[EUR][1000 genomes]
rs16957997	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16958019	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16958041	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16958050	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2306462	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2415153	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28834466	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3889590	0.82[EUR][1000 genomes]
rs55636021	0.86[EUR][1000 genomes]
rs55695286	0.86[EUR][1000 genomes]
rs56190024	0.86[EUR][1000 genomes]
rs56227598	0.82[EUR][1000 genomes]
rs57995256	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60419012	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6495066	0.82[EUR][1000 genomes]
rs7163212	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7163693	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7164953	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7165447	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7166673	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7169976	0.86[EUR][1000 genomes]
rs7172448	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7173068	0.82[EUR][1000 genomes]
rs7176452	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7178806	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs729155	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8027255	0.82[EUR][1000 genomes]
rs8028749	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8033242	0.94[EUR][1000 genomes]
rs8039862	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8040552	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037540	chr15:73712637-73982420	Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73847400-73893200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr15:73847600-73882400	Strong transcription	Placenta	Placenta
3	chr15:73848800-73884800	Strong transcription	Primary T helper cells fromperipheralblood	blood
4	chr15:73848800-73885000	Strong transcription	Primary B cells from cord blood	blood
5	chr15:73850200-73884400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
6	chr15:73856400-73878000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr15:73857400-73877200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr15:73857400-73884800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr15:73857600-73878000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
10	chr15:73857600-73885000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr15:73858000-73884800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr15:73858200-73885800	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr15:73859400-73882000	Strong transcription	Primary neutrophils fromperipheralblood	blood
14	chr15:73860600-73885000	Strong transcription	Primary T helper cells PMA-I stimulated	--
15	chr15:73862200-73884800	Strong transcription	Fetal Muscle Trunk	muscle
16	chr15:73863200-73889400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr15:73863800-73882000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr15:73866400-73878200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr15:73866600-73876800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr15:73866800-73877200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr15:73866800-73884800	Strong transcription	Fetal Muscle Leg	muscle
22	chr15:73867800-73877000	Strong transcription	Duodenum Smooth Muscle	Duodenum
23	chr15:73867800-73878000	Strong transcription	GM12878-XiMat	blood
24	chr15:73867800-73884400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr15:73868200-73876800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
26	chr15:73870000-73884400	Strong transcription	Muscle Satellite Cultured Cells	--
27	chr15:73870200-73879400	Strong transcription	NHDF-Ad	bronchial
28	chr15:73870200-73881600	Strong transcription	Brain Hippocampus Middle	brain
29	chr15:73870200-73884600	Strong transcription	HepG2	liver
30	chr15:73870400-73887000	Strong transcription	Primary T cells from cord blood	blood
31	chr15:73870600-73878000	Weak transcription	Small Intestine	intestine
32	chr15:73870600-73878200	Weak transcription	Esophagus	oesophagus
33	chr15:73870800-73876800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr15:73871400-73884600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr15:73871600-73884200	Strong transcription	Cortex derived primary cultured neurospheres	brain
36	chr15:73871600-73884400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
37	chr15:73871600-73884600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr15:73871600-73884600	Strong transcription	HMEC	breast
39	chr15:73871600-73886000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr15:73871600-73886400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr15:73871600-73887400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr15:73871800-73876400	Strong transcription	Fetal Kidney	kidney
43	chr15:73871800-73877000	Strong transcription	Rectal Smooth Muscle	rectum
44	chr15:73871800-73877800	Strong transcription	Duodenum Mucosa	Duodenum
45	chr15:73871800-73882200	Strong transcription	Skeletal Muscle Female	skeletal muscle
46	chr15:73871800-73882800	Strong transcription	Liver	Liver
47	chr15:73871800-73883600	Strong transcription	Left Ventricle	heart
48	chr15:73871800-73884400	Strong transcription	Rectal Mucosa Donor 31	rectum
49	chr15:73871800-73884600	Strong transcription	Fetal Lung	lung
50	chr15:73871800-73884800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood

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