Variant report

Variant	rs8040552
Chromosome Location	chr15:73774242-73774243
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10162605	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10163172	0.95[EUR][1000 genomes]
rs11638472	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11854774	0.87[ASN][1000 genomes]
rs11856313	0.81[ASN][1000 genomes]
rs12324832	0.87[ASN][1000 genomes]
rs12908815	0.95[EUR][1000 genomes]
rs13380155	0.93[EUR][1000 genomes]
rs13380245	0.95[EUR][1000 genomes]
rs1481087	0.84[ASN][1000 genomes]
rs1582742	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16957919	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16957997	0.86[ASN][1000 genomes]
rs16958019	0.81[ASN][1000 genomes]
rs16958025	0.89[ASN][1000 genomes]
rs16958041	0.86[ASN][1000 genomes]
rs16958050	0.87[ASN][1000 genomes]
rs2306462	0.84[ASN][1000 genomes]
rs28834466	0.95[ASN][1000 genomes]
rs3889590	0.95[EUR][1000 genomes]
rs55636021	0.95[EUR][1000 genomes]
rs55695286	0.95[EUR][1000 genomes]
rs56190024	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56227598	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs57995256	0.98[ASN][1000 genomes]
rs60419012	0.84[ASN][1000 genomes]
rs6495066	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7163212	0.86[ASN][1000 genomes]
rs7163693	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7164953	0.95[ASN][1000 genomes]
rs7165447	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7166673	0.87[ASN][1000 genomes]
rs7169976	0.95[EUR][1000 genomes]
rs7172130	0.87[EUR][1000 genomes]
rs7172448	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7173068	0.98[EUR][1000 genomes]
rs7176452	0.80[ASN][1000 genomes]
rs7177731	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7178806	0.84[ASN][1000 genomes]
rs729155	0.84[ASN][1000 genomes]
rs8027255	0.98[EUR][1000 genomes]
rs8028749	0.89[ASN][1000 genomes]
rs8033242	0.85[EUR][1000 genomes]
rs8036438	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs8039862	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904343	chr15:73396760-73775043	Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv1037540	chr15:73712637-73982420	Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv525433	chr15:73766072-73833600	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73773800-73775400	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr15:73774200-73774400	Enhancers	Monocytes-CD14+_RO01746	blood
3	chr15:73774200-73775200	Enhancers	K562	blood

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